miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 3' -54.7 NC_005887.1 + 13908 0.72 0.293769
Target:  5'- -cGGCaUUCGuGGCACGuACGCGgugUCGACg -3'
miRNA:   3'- aaCCG-AAGC-UCGUGCuUGCGC---AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 14550 0.67 0.607211
Target:  5'- --cGCggCGGGCACGAucuGCGCGaggccCGACa -3'
miRNA:   3'- aacCGaaGCUCGUGCU---UGCGCa----GCUG- -5'
28163 3' -54.7 NC_005887.1 + 14692 0.68 0.518044
Target:  5'- -cGGCUgccgUGAGCGCGcccucGACGgCGcCGACg -3'
miRNA:   3'- aaCCGAa---GCUCGUGC-----UUGC-GCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 14706 0.7 0.395802
Target:  5'- -cGGCgggCGGGC-CGGGCGCGgCGAUc -3'
miRNA:   3'- aaCCGaa-GCUCGuGCUUGCGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 15022 0.69 0.464983
Target:  5'- -aGGCgUCGAGuUGCG-GCGCGUCGuACg -3'
miRNA:   3'- aaCCGaAGCUC-GUGCuUGCGCAGC-UG- -5'
28163 3' -54.7 NC_005887.1 + 15483 0.66 0.663962
Target:  5'- --cGCgUUCGAGCugGccGCGCGUCaGAUg -3'
miRNA:   3'- aacCG-AAGCUCGugCu-UGCGCAG-CUG- -5'
28163 3' -54.7 NC_005887.1 + 15491 0.71 0.342049
Target:  5'- -cGGUUgacCGAaCACGuauGCGCGUCGACg -3'
miRNA:   3'- aaCCGAa--GCUcGUGCu--UGCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 15636 0.68 0.507225
Target:  5'- -cGGCgaucagcgaaUCGAGCGCGGucgcGCGCGcCGAg -3'
miRNA:   3'- aaCCGa---------AGCUCGUGCU----UGCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 16616 0.76 0.165789
Target:  5'- -cGGCUUCGuGCACGAguugcugACGCGcccacUCGGCg -3'
miRNA:   3'- aaCCGAAGCuCGUGCU-------UGCGC-----AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 17172 0.67 0.607211
Target:  5'- -aGGCguggGAGCgcGCGAACGCGgccgcacgCGGCa -3'
miRNA:   3'- aaCCGaag-CUCG--UGCUUGCGCa-------GCUG- -5'
28163 3' -54.7 NC_005887.1 + 17227 0.68 0.518044
Target:  5'- -gGGCgugUGGGaCACGAuCGCGUaCGGCg -3'
miRNA:   3'- aaCCGaa-GCUC-GUGCUuGCGCA-GCUG- -5'
28163 3' -54.7 NC_005887.1 + 17681 0.66 0.629916
Target:  5'- cUUGGCgacgUCG-GCACGAuguuCGUGaCGGCc -3'
miRNA:   3'- -AACCGa---AGCuCGUGCUu---GCGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 18416 0.68 0.528953
Target:  5'- -cGGCgcucgUCGucAGCACGAcgcugaucgGCGCGaucUCGACg -3'
miRNA:   3'- aaCCGa----AGC--UCGUGCU---------UGCGC---AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 18720 0.7 0.424646
Target:  5'- cUGcGCgcagCG-GCugGAACaGCGUCGACa -3'
miRNA:   3'- aAC-CGaa--GCuCGugCUUG-CGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 19808 0.68 0.551014
Target:  5'- aUGGCgcgacCGGaaACGGGgGCGUCGACg -3'
miRNA:   3'- aACCGaa---GCUcgUGCUUgCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 21456 0.68 0.518044
Target:  5'- --aGCgUCGAGCACGGucaGCGgGUCGGg -3'
miRNA:   3'- aacCGaAGCUCGUGCU---UGCgCAGCUg -5'
28163 3' -54.7 NC_005887.1 + 24150 0.68 0.518044
Target:  5'- -gGGCUUCGAgaucgccucGCAgGAACGCccgaUCGAUa -3'
miRNA:   3'- aaCCGAAGCU---------CGUgCUUGCGc---AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 26106 0.66 0.618557
Target:  5'- aUGGCgUCGAGCAgGAuguccugcacgGCGCGcuucguuucgCGGCg -3'
miRNA:   3'- aACCGaAGCUCGUgCU-----------UGCGCa---------GCUG- -5'
28163 3' -54.7 NC_005887.1 + 26476 0.67 0.595887
Target:  5'- -aGGCcaCGAGCACGGGCaUGcCGGCc -3'
miRNA:   3'- aaCCGaaGCUCGUGCUUGcGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 27100 0.66 0.663962
Target:  5'- cUGG-UUCGA-CAC--GCGCGUCGACu -3'
miRNA:   3'- aACCgAAGCUcGUGcuUGCGCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.