miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 3' -54.7 NC_005887.1 + 9806 0.7 0.424646
Target:  5'- gUGGgUgaUUGGGCccGCGAACGCGUCG-Ca -3'
miRNA:   3'- aACCgA--AGCUCG--UGCUUGCGCAGCuG- -5'
28163 3' -54.7 NC_005887.1 + 35642 0.7 0.434536
Target:  5'- -gGGCUgagcggugCGAGCuCG-ACGCuGUCGACa -3'
miRNA:   3'- aaCCGAa-------GCUCGuGCuUGCG-CAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 32808 0.69 0.444558
Target:  5'- --cGCUUcaCGGGCACGAACaGCGggcCGACg -3'
miRNA:   3'- aacCGAA--GCUCGUGCUUG-CGCa--GCUG- -5'
28163 3' -54.7 NC_005887.1 + 15022 0.69 0.464983
Target:  5'- -aGGCgUCGAGuUGCG-GCGCGUCGuACg -3'
miRNA:   3'- aaCCGaAGCUC-GUGCuUGCGCAGC-UG- -5'
28163 3' -54.7 NC_005887.1 + 1556 0.68 0.496504
Target:  5'- -cGGCcgCGccGCGCGAGCGCcgcacgccGUCGGCg -3'
miRNA:   3'- aaCCGaaGCu-CGUGCUUGCG--------CAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 41051 0.68 0.507225
Target:  5'- -aGGCUUCGAGCuCGGGCaCGUacaucaGGCc -3'
miRNA:   3'- aaCCGAAGCUCGuGCUUGcGCAg-----CUG- -5'
28163 3' -54.7 NC_005887.1 + 15636 0.68 0.507225
Target:  5'- -cGGCgaucagcgaaUCGAGCGCGGucgcGCGCGcCGAg -3'
miRNA:   3'- aaCCGa---------AGCUCGUGCU----UGCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 9465 0.68 0.507225
Target:  5'- gUGGUcaCGGGUACGGugGCGaCGAa -3'
miRNA:   3'- aACCGaaGCUCGUGCUugCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 27755 0.68 0.507225
Target:  5'- gUGGC--CGAuGC-CGAGCGCGcCGGCg -3'
miRNA:   3'- aACCGaaGCU-CGuGCUUGCGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 30593 0.68 0.507225
Target:  5'- --cGCUUCGAGCcggaucGCGAgcaacucgcgcaGCGCGUcCGGCa -3'
miRNA:   3'- aacCGAAGCUCG------UGCU------------UGCGCA-GCUG- -5'
28163 3' -54.7 NC_005887.1 + 21456 0.68 0.518044
Target:  5'- --aGCgUCGAGCACGGucaGCGgGUCGGg -3'
miRNA:   3'- aacCGaAGCUCGUGCU---UGCgCAGCUg -5'
28163 3' -54.7 NC_005887.1 + 17227 0.68 0.518044
Target:  5'- -gGGCgugUGGGaCACGAuCGCGUaCGGCg -3'
miRNA:   3'- aaCCGaa-GCUC-GUGCUuGCGCA-GCUG- -5'
28163 3' -54.7 NC_005887.1 + 14692 0.68 0.518044
Target:  5'- -cGGCUgccgUGAGCGCGcccucGACGgCGcCGACg -3'
miRNA:   3'- aaCCGAa---GCUCGUGC-----UUGC-GCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 24150 0.68 0.518044
Target:  5'- -gGGCUUCGAgaucgccucGCAgGAACGCccgaUCGAUa -3'
miRNA:   3'- aaCCGAAGCU---------CGUgCUUGCGc---AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 18416 0.68 0.528953
Target:  5'- -cGGCgcucgUCGucAGCACGAcgcugaucgGCGCGaucUCGACg -3'
miRNA:   3'- aaCCGa----AGC--UCGUGCU---------UGCGC---AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 34544 0.68 0.539945
Target:  5'- -gGGCgacagcuucUCGGGCGCGAGcCGCG-CGAa -3'
miRNA:   3'- aaCCGa--------AGCUCGUGCUU-GCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 31692 0.68 0.539945
Target:  5'- -cGGCUgguUCGucGGCAgaaccuCGGACGCGUgCGGCg -3'
miRNA:   3'- aaCCGA---AGC--UCGU------GCUUGCGCA-GCUG- -5'
28163 3' -54.7 NC_005887.1 + 8523 0.68 0.539945
Target:  5'- -cGGUUgcgcCGGGCGCucGAuCGCGUUGACg -3'
miRNA:   3'- aaCCGAa---GCUCGUG--CUuGCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 19808 0.68 0.551014
Target:  5'- aUGGCgcgacCGGaaACGGGgGCGUCGACg -3'
miRNA:   3'- aACCGaa---GCUcgUGCUUgCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 8022 0.68 0.551014
Target:  5'- -cGGCUacgcucaacUCGAuGUACGAcgACGUGcUCGACg -3'
miRNA:   3'- aaCCGA---------AGCU-CGUGCU--UGCGC-AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.