miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 3' -54.7 NC_005887.1 + 14550 0.67 0.607211
Target:  5'- --cGCggCGGGCACGAucuGCGCGaggccCGACa -3'
miRNA:   3'- aacCGaaGCUCGUGCU---UGCGCa----GCUG- -5'
28163 3' -54.7 NC_005887.1 + 41276 0.67 0.595887
Target:  5'- -cGGUcaCGGGCACGAcgACGCG-CGGg -3'
miRNA:   3'- aaCCGaaGCUCGUGCU--UGCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 28905 0.67 0.595887
Target:  5'- -cGGCUaCGAauuggaugcGCGCGcccauUGCGUCGACg -3'
miRNA:   3'- aaCCGAaGCU---------CGUGCuu---GCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 26476 0.67 0.595887
Target:  5'- -aGGCcaCGAGCACGGGCaUGcCGGCc -3'
miRNA:   3'- aaCCGaaGCUCGUGCUUGcGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 41859 0.67 0.594757
Target:  5'- gUGGUUggUUG-GCAUGAACGCGacccacgUCGGCa -3'
miRNA:   3'- aACCGA--AGCuCGUGCUUGCGC-------AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 28284 0.67 0.584596
Target:  5'- -cGGCacgcCGAGCGCGcGCaGCGUCGugGCg -3'
miRNA:   3'- aaCCGaa--GCUCGUGCuUG-CGCAGC--UG- -5'
28163 3' -54.7 NC_005887.1 + 41271 0.67 0.584596
Target:  5'- aUGGCgccgUCGAccugcGCACGGGCGCG-CuGCu -3'
miRNA:   3'- aACCGa---AGCU-----CGUGCUUGCGCaGcUG- -5'
28163 3' -54.7 NC_005887.1 + 1049 0.67 0.584596
Target:  5'- -aGGCUUCGAGaucaaGACGCaGUCGAa -3'
miRNA:   3'- aaCCGAAGCUCgugc-UUGCG-CAGCUg -5'
28163 3' -54.7 NC_005887.1 + 7475 0.67 0.584596
Target:  5'- -cGGCggCGGGUGCGAccgugGCGaucguCGUCGGCg -3'
miRNA:   3'- aaCCGaaGCUCGUGCU-----UGC-----GCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 40554 0.67 0.58347
Target:  5'- cUGGCgcUCGcGCACGAguucucgGCGCGcUCGAg -3'
miRNA:   3'- aACCGa-AGCuCGUGCU-------UGCGC-AGCUg -5'
28163 3' -54.7 NC_005887.1 + 36387 0.67 0.573348
Target:  5'- cUGGa-UCGAGUGCGcg-GCGUCGACc -3'
miRNA:   3'- aACCgaAGCUCGUGCuugCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 7221 0.67 0.573348
Target:  5'- -aGGCgcugUCG-GCGuCGGGCGCaUCGACc -3'
miRNA:   3'- aaCCGa---AGCuCGU-GCUUGCGcAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 19808 0.68 0.551014
Target:  5'- aUGGCgcgacCGGaaACGGGgGCGUCGACg -3'
miRNA:   3'- aACCGaa---GCUcgUGCUUgCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 8022 0.68 0.551014
Target:  5'- -cGGCUacgcucaacUCGAuGUACGAcgACGUGcUCGACg -3'
miRNA:   3'- aaCCGA---------AGCU-CGUGCU--UGCGC-AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 31692 0.68 0.539945
Target:  5'- -cGGCUgguUCGucGGCAgaaccuCGGACGCGUgCGGCg -3'
miRNA:   3'- aaCCGA---AGC--UCGU------GCUUGCGCA-GCUG- -5'
28163 3' -54.7 NC_005887.1 + 34544 0.68 0.539945
Target:  5'- -gGGCgacagcuucUCGGGCGCGAGcCGCG-CGAa -3'
miRNA:   3'- aaCCGa--------AGCUCGUGCUU-GCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 8523 0.68 0.539945
Target:  5'- -cGGUUgcgcCGGGCGCucGAuCGCGUUGACg -3'
miRNA:   3'- aaCCGAa---GCUCGUG--CUuGCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 18416 0.68 0.528953
Target:  5'- -cGGCgcucgUCGucAGCACGAcgcugaucgGCGCGaucUCGACg -3'
miRNA:   3'- aaCCGa----AGC--UCGUGCU---------UGCGC---AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 17227 0.68 0.518044
Target:  5'- -gGGCgugUGGGaCACGAuCGCGUaCGGCg -3'
miRNA:   3'- aaCCGaa-GCUC-GUGCUuGCGCA-GCUG- -5'
28163 3' -54.7 NC_005887.1 + 21456 0.68 0.518044
Target:  5'- --aGCgUCGAGCACGGucaGCGgGUCGGg -3'
miRNA:   3'- aacCGaAGCUCGUGCU---UGCgCAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.