Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28163 | 3' | -54.7 | NC_005887.1 | + | 17227 | 0.68 | 0.518044 |
Target: 5'- -gGGCgugUGGGaCACGAuCGCGUaCGGCg -3' miRNA: 3'- aaCCGaa-GCUC-GUGCUuGCGCA-GCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 24150 | 0.68 | 0.518044 |
Target: 5'- -gGGCUUCGAgaucgccucGCAgGAACGCccgaUCGAUa -3' miRNA: 3'- aaCCGAAGCU---------CGUgCUUGCGc---AGCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 27987 | 0.72 | 0.317218 |
Target: 5'- -cGGC-UCGGGC-CGAAuCGCGUCGuCg -3' miRNA: 3'- aaCCGaAGCUCGuGCUU-GCGCAGCuG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 40352 | 0.72 | 0.314811 |
Target: 5'- cUGGCcgUCGAGCGCGGccgugccgcucgucGCGCG-CGAg -3' miRNA: 3'- aACCGa-AGCUCGUGCU--------------UGCGCaGCUg -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 13908 | 0.72 | 0.293769 |
Target: 5'- -cGGCaUUCGuGGCACGuACGCGgugUCGACg -3' miRNA: 3'- aaCCG-AAGC-UCGUGCuUGCGC---AGCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 10195 | 0.73 | 0.2789 |
Target: 5'- -cGGUUucgUCGAGUGCGu-CGCGUCGAUg -3' miRNA: 3'- aaCCGA---AGCUCGUGCuuGCGCAGCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 33947 | 0.73 | 0.264637 |
Target: 5'- -cGGCgcucggCGAGCACGu-CGCGUgCGGCg -3' miRNA: 3'- aaCCGaa----GCUCGUGCuuGCGCA-GCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 28568 | 0.74 | 0.250971 |
Target: 5'- -aGGCgUCGccgcccgcuGCGCGGACGCgGUCGACg -3' miRNA: 3'- aaCCGaAGCu--------CGUGCUUGCG-CAGCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 2412 | 0.76 | 0.166257 |
Target: 5'- cUGGCUUCGAG-GCGAAgccCGCGcCGACg -3' miRNA: 3'- aACCGAAGCUCgUGCUU---GCGCaGCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 39917 | 0.8 | 0.099032 |
Target: 5'- gUGcGCgcagaUCGAGC-CGGGCGCGUCGACg -3' miRNA: 3'- aAC-CGa----AGCUCGuGCUUGCGCAGCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 42091 | 0.71 | 0.342049 |
Target: 5'- --cGCgUgGGGCGCGAugcCGCGUCGACg -3' miRNA: 3'- aacCGaAgCUCGUGCUu--GCGCAGCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 38590 | 0.71 | 0.359367 |
Target: 5'- -cGGUgucuuugUCGAGCGCGAuguaGCGCuUCGGCc -3' miRNA: 3'- aaCCGa------AGCUCGUGCU----UGCGcAGCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 30593 | 0.68 | 0.507225 |
Target: 5'- --cGCUUCGAGCcggaucGCGAgcaacucgcgcaGCGCGUcCGGCa -3' miRNA: 3'- aacCGAAGCUCG------UGCU------------UGCGCA-GCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 27755 | 0.68 | 0.507225 |
Target: 5'- gUGGC--CGAuGC-CGAGCGCGcCGGCg -3' miRNA: 3'- aACCGaaGCU-CGuGCUUGCGCaGCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 9465 | 0.68 | 0.507225 |
Target: 5'- gUGGUcaCGGGUACGGugGCGaCGAa -3' miRNA: 3'- aACCGaaGCUCGUGCUugCGCaGCUg -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 32808 | 0.69 | 0.444558 |
Target: 5'- --cGCUUcaCGGGCACGAACaGCGggcCGACg -3' miRNA: 3'- aacCGAA--GCUCGUGCUUG-CGCa--GCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 35642 | 0.7 | 0.434536 |
Target: 5'- -gGGCUgagcggugCGAGCuCG-ACGCuGUCGACa -3' miRNA: 3'- aaCCGAa-------GCUCGuGCuUGCG-CAGCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 9806 | 0.7 | 0.424646 |
Target: 5'- gUGGgUgaUUGGGCccGCGAACGCGUCG-Ca -3' miRNA: 3'- aACCgA--AGCUCG--UGCUUGCGCAGCuG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 3479 | 0.7 | 0.414892 |
Target: 5'- cUGGCgcgcugaugaUCGAGCACGA---CGUCGGCa -3' miRNA: 3'- aACCGa---------AGCUCGUGCUugcGCAGCUG- -5' |
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28163 | 3' | -54.7 | NC_005887.1 | + | 14706 | 0.7 | 0.395802 |
Target: 5'- -cGGCgggCGGGC-CGGGCGCGgCGAUc -3' miRNA: 3'- aaCCGaa-GCUCGuGCUUGCGCaGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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