miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 3' -54.7 NC_005887.1 + 17227 0.68 0.518044
Target:  5'- -gGGCgugUGGGaCACGAuCGCGUaCGGCg -3'
miRNA:   3'- aaCCGaa-GCUC-GUGCUuGCGCA-GCUG- -5'
28163 3' -54.7 NC_005887.1 + 3479 0.7 0.414892
Target:  5'- cUGGCgcgcugaugaUCGAGCACGA---CGUCGGCa -3'
miRNA:   3'- aACCGa---------AGCUCGUGCUugcGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 9806 0.7 0.424646
Target:  5'- gUGGgUgaUUGGGCccGCGAACGCGUCG-Ca -3'
miRNA:   3'- aACCgA--AGCUCG--UGCUUGCGCAGCuG- -5'
28163 3' -54.7 NC_005887.1 + 35642 0.7 0.434536
Target:  5'- -gGGCUgagcggugCGAGCuCG-ACGCuGUCGACa -3'
miRNA:   3'- aaCCGAa-------GCUCGuGCuUGCG-CAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 32808 0.69 0.444558
Target:  5'- --cGCUUcaCGGGCACGAACaGCGggcCGACg -3'
miRNA:   3'- aacCGAA--GCUCGUGCUUG-CGCa--GCUG- -5'
28163 3' -54.7 NC_005887.1 + 9465 0.68 0.507225
Target:  5'- gUGGUcaCGGGUACGGugGCGaCGAa -3'
miRNA:   3'- aACCGaaGCUCGUGCUugCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 27755 0.68 0.507225
Target:  5'- gUGGC--CGAuGC-CGAGCGCGcCGGCg -3'
miRNA:   3'- aACCGaaGCU-CGuGCUUGCGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 30593 0.68 0.507225
Target:  5'- --cGCUUCGAGCcggaucGCGAgcaacucgcgcaGCGCGUcCGGCa -3'
miRNA:   3'- aacCGAAGCUCG------UGCU------------UGCGCA-GCUG- -5'
28163 3' -54.7 NC_005887.1 + 24150 0.68 0.518044
Target:  5'- -gGGCUUCGAgaucgccucGCAgGAACGCccgaUCGAUa -3'
miRNA:   3'- aaCCGAAGCU---------CGUgCUUGCGc---AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 14706 0.7 0.395802
Target:  5'- -cGGCgggCGGGC-CGGGCGCGgCGAUc -3'
miRNA:   3'- aaCCGaa-GCUCGuGCUUGCGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 38590 0.71 0.359367
Target:  5'- -cGGUgucuuugUCGAGCGCGAuguaGCGCuUCGGCc -3'
miRNA:   3'- aaCCGa------AGCUCGUGCU----UGCGcAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 42091 0.71 0.342049
Target:  5'- --cGCgUgGGGCGCGAugcCGCGUCGACg -3'
miRNA:   3'- aacCGaAgCUCGUGCUu--GCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 39917 0.8 0.099032
Target:  5'- gUGcGCgcagaUCGAGC-CGGGCGCGUCGACg -3'
miRNA:   3'- aAC-CGa----AGCUCGuGCUUGCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 2412 0.76 0.166257
Target:  5'- cUGGCUUCGAG-GCGAAgccCGCGcCGACg -3'
miRNA:   3'- aACCGAAGCUCgUGCUU---GCGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 28568 0.74 0.250971
Target:  5'- -aGGCgUCGccgcccgcuGCGCGGACGCgGUCGACg -3'
miRNA:   3'- aaCCGaAGCu--------CGUGCUUGCG-CAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 33947 0.73 0.264637
Target:  5'- -cGGCgcucggCGAGCACGu-CGCGUgCGGCg -3'
miRNA:   3'- aaCCGaa----GCUCGUGCuuGCGCA-GCUG- -5'
28163 3' -54.7 NC_005887.1 + 10195 0.73 0.2789
Target:  5'- -cGGUUucgUCGAGUGCGu-CGCGUCGAUg -3'
miRNA:   3'- aaCCGA---AGCUCGUGCuuGCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 13908 0.72 0.293769
Target:  5'- -cGGCaUUCGuGGCACGuACGCGgugUCGACg -3'
miRNA:   3'- aaCCG-AAGC-UCGUGCuUGCGC---AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 40352 0.72 0.314811
Target:  5'- cUGGCcgUCGAGCGCGGccgugccgcucgucGCGCG-CGAg -3'
miRNA:   3'- aACCGa-AGCUCGUGCU--------------UGCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 27987 0.72 0.317218
Target:  5'- -cGGC-UCGGGC-CGAAuCGCGUCGuCg -3'
miRNA:   3'- aaCCGaAGCUCGuGCUU-GCGCAGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.