miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 3' -54.7 NC_005887.1 + 35467 0.66 0.663962
Target:  5'- -gGGCgaaggcCGuGCGCGGGCGCaUCGAg -3'
miRNA:   3'- aaCCGaa----GCuCGUGCUUGCGcAGCUg -5'
28163 3' -54.7 NC_005887.1 + 15636 0.68 0.507225
Target:  5'- -cGGCgaucagcgaaUCGAGCGCGGucgcGCGCGcCGAg -3'
miRNA:   3'- aaCCGa---------AGCUCGUGCU----UGCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 1556 0.68 0.496504
Target:  5'- -cGGCcgCGccGCGCGAGCGCcgcacgccGUCGGCg -3'
miRNA:   3'- aaCCGaaGCu-CGUGCUUGCG--------CAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 16616 0.76 0.165789
Target:  5'- -cGGCUUCGuGCACGAguugcugACGCGcccacUCGGCg -3'
miRNA:   3'- aaCCGAAGCuCGUGCU-------UGCGC-----AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 37140 0.66 0.629916
Target:  5'- --cGCUUCG-GUGCGAACGcCGUCaGCg -3'
miRNA:   3'- aacCGAAGCuCGUGCUUGC-GCAGcUG- -5'
28163 3' -54.7 NC_005887.1 + 496 0.66 0.629916
Target:  5'- -aGGgUUCGAGCgcagcaacaGCGGGCgGCG-CGGCg -3'
miRNA:   3'- aaCCgAAGCUCG---------UGCUUG-CGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 10273 0.66 0.618557
Target:  5'- -cGGCg-CGGGCAUcGACGCGacgcacUCGACg -3'
miRNA:   3'- aaCCGaaGCUCGUGcUUGCGC------AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 32197 0.66 0.618557
Target:  5'- -aGGUUgCGAGCA---GCGCuGUCGACg -3'
miRNA:   3'- aaCCGAaGCUCGUgcuUGCG-CAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 41859 0.67 0.594757
Target:  5'- gUGGUUggUUG-GCAUGAACGCGacccacgUCGGCa -3'
miRNA:   3'- aACCGA--AGCuCGUGCUUGCGC-------AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 14692 0.68 0.518044
Target:  5'- -cGGCUgccgUGAGCGCGcccucGACGgCGcCGACg -3'
miRNA:   3'- aaCCGAa---GCUCGUGC-----UUGC-GCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 36387 0.67 0.573348
Target:  5'- cUGGa-UCGAGUGCGcg-GCGUCGACc -3'
miRNA:   3'- aACCgaAGCUCGUGCuugCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 41276 0.67 0.595887
Target:  5'- -cGGUcaCGGGCACGAcgACGCG-CGGg -3'
miRNA:   3'- aaCCGaaGCUCGUGCU--UGCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 5652 0.66 0.66283
Target:  5'- cUUGGCcUCGAcgaacugGCGCaGGucaGCGUCGGCg -3'
miRNA:   3'- -AACCGaAGCU-------CGUG-CUug-CGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 8523 0.68 0.539945
Target:  5'- -cGGUUgcgcCGGGCGCucGAuCGCGUUGACg -3'
miRNA:   3'- aaCCGAa---GCUCGUG--CUuGCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 31452 0.66 0.652629
Target:  5'- -cGGCacgcacCGcuAGC-CGAGCGCGUCGAg -3'
miRNA:   3'- aaCCGaa----GC--UCGuGCUUGCGCAGCUg -5'
28163 3' -54.7 NC_005887.1 + 14550 0.67 0.607211
Target:  5'- --cGCggCGGGCACGAucuGCGCGaggccCGACa -3'
miRNA:   3'- aacCGaaGCUCGUGCU---UGCGCa----GCUG- -5'
28163 3' -54.7 NC_005887.1 + 34544 0.68 0.539945
Target:  5'- -gGGCgacagcuucUCGGGCGCGAGcCGCG-CGAa -3'
miRNA:   3'- aaCCGa--------AGCUCGUGCUU-GCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 41051 0.68 0.507225
Target:  5'- -aGGCUUCGAGCuCGGGCaCGUacaucaGGCc -3'
miRNA:   3'- aaCCGAAGCUCGuGCUUGcGCAg-----CUG- -5'
28163 3' -54.7 NC_005887.1 + 32738 0.66 0.641277
Target:  5'- -cGGUUgcCGaAGCGCGcACGCG-CGACa -3'
miRNA:   3'- aaCCGAa-GC-UCGUGCuUGCGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 8950 0.66 0.629916
Target:  5'- -aGGUccgCGAGCGCGuACGgCGUCG-Cg -3'
miRNA:   3'- aaCCGaa-GCUCGUGCuUGC-GCAGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.