miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 16602 0.71 0.346402
Target:  5'- -aGUUGCUGACGCGCccacucgGCGcCgGCGGCg -3'
miRNA:   3'- gaCAGCGAUUGCGCG-------UGCaG-CGUCGg -5'
28163 5' -55.4 NC_005887.1 + 24935 0.71 0.347246
Target:  5'- uUGUCGaucgcGACGCGUGCG-CGCgGGCCg -3'
miRNA:   3'- gACAGCga---UUGCGCGUGCaGCG-UCGG- -5'
28163 5' -55.4 NC_005887.1 + 12670 0.71 0.355773
Target:  5'- uCUG-CGUcAGCaCGCcgaGCGUCGCGGCCg -3'
miRNA:   3'- -GACaGCGaUUGcGCG---UGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 40868 0.71 0.364446
Target:  5'- -cGUCGa--GCG-GCGCGUCGCcGCCa -3'
miRNA:   3'- gaCAGCgauUGCgCGUGCAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 30793 0.71 0.373264
Target:  5'- uCUGcgCGCgaucaaUGGCGCGCAC--CGCGGCCu -3'
miRNA:   3'- -GACa-GCG------AUUGCGCGUGcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 26833 0.71 0.373264
Target:  5'- -cGUgCGCgAGCGgGCGCGUCugccgGUAGCCg -3'
miRNA:   3'- gaCA-GCGaUUGCgCGUGCAG-----CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 8082 0.71 0.373264
Target:  5'- -gGUCGUUcACgaaaGCGCGCG-CGCAGCUc -3'
miRNA:   3'- gaCAGCGAuUG----CGCGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 40760 0.7 0.382226
Target:  5'- -cGcCGUUGGCGCGcCGCG-CGCcGCCg -3'
miRNA:   3'- gaCaGCGAUUGCGC-GUGCaGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 12173 0.7 0.382226
Target:  5'- cCUGgCGCUucuGCGCggccaGCACGUCGguGaCCu -3'
miRNA:   3'- -GACaGCGAu--UGCG-----CGUGCAGCguC-GG- -5'
28163 5' -55.4 NC_005887.1 + 16509 0.7 0.39133
Target:  5'- aUGUCGCaGGC-CGauCGCGUCGCcGCCg -3'
miRNA:   3'- gACAGCGaUUGcGC--GUGCAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 8710 0.7 0.39133
Target:  5'- -cGcCGCggcgguaaGCGCuuCGUCGCGGCCa -3'
miRNA:   3'- gaCaGCGauug----CGCGu-GCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 12491 0.7 0.39133
Target:  5'- --aUCGCgauCGCGCGCG-CGCGGUg -3'
miRNA:   3'- gacAGCGauuGCGCGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 30285 0.7 0.39133
Target:  5'- --aUCGUgc-CGCGCACGacguUCGCAGUCa -3'
miRNA:   3'- gacAGCGauuGCGCGUGC----AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 30203 0.7 0.409957
Target:  5'- --cUCGCcggccagccACGC-CGCGUCGCGGCCu -3'
miRNA:   3'- gacAGCGau-------UGCGcGUGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14184 0.7 0.419475
Target:  5'- -cGUCGaUUGcACGCGCuguCGggCGCGGCCu -3'
miRNA:   3'- gaCAGC-GAU-UGCGCGu--GCa-GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 28983 0.7 0.419475
Target:  5'- -cGUCGaCgcaaugGGCGCGCGCauccaauUCGUAGCCg -3'
miRNA:   3'- gaCAGC-Ga-----UUGCGCGUGc------AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14026 0.7 0.419475
Target:  5'- ---cCGCcGGCGCGC-CGccggCGCAGCCu -3'
miRNA:   3'- gacaGCGaUUGCGCGuGCa---GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 26499 0.7 0.419475
Target:  5'- --cUCGCgcggcuGCaGCGCGCGUucccgCGCGGCCg -3'
miRNA:   3'- gacAGCGau----UG-CGCGUGCA-----GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 34570 0.7 0.419475
Target:  5'- aUGUCGaucguCGCGUucACGUaGCAGCCg -3'
miRNA:   3'- gACAGCgauu-GCGCG--UGCAgCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 41544 0.7 0.419475
Target:  5'- -aGgCGCUcGGCGCGCACG-CGaaguCAGCCa -3'
miRNA:   3'- gaCaGCGA-UUGCGCGUGCaGC----GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.