miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28164 5' -58.7 NC_005887.1 + 28942 1.06 0.000479
Target:  5'- gACAGCGAGCACUGGCGGUCCUCGACu -3'
miRNA:   3'- gUGUCGCUCGUGACCGCCAGGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 4670 0.76 0.100292
Target:  5'- cCGCGGCGAGCAucuguugcauCUGcGCGGccugcgCCUCGGCg -3'
miRNA:   3'- -GUGUCGCUCGU----------GAC-CGCCa-----GGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 11387 0.74 0.125697
Target:  5'- gCGCAGCcgGAGCGCUGGCGG-CCggCGcCg -3'
miRNA:   3'- -GUGUCG--CUCGUGACCGCCaGGa-GCuG- -5'
28164 5' -58.7 NC_005887.1 + 10778 0.73 0.156523
Target:  5'- aACAGCG-GCACcGcGCGGUCCaucgcguUCGACg -3'
miRNA:   3'- gUGUCGCuCGUGaC-CGCCAGG-------AGCUG- -5'
28164 5' -58.7 NC_005887.1 + 35569 0.72 0.17039
Target:  5'- uGCGGCGAGCGCcgGGCacacGG-CCUUGGCc -3'
miRNA:   3'- gUGUCGCUCGUGa-CCG----CCaGGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 33611 0.71 0.217022
Target:  5'- uGC-GCGAGCGCgGcGUGGUCUUCGAa -3'
miRNA:   3'- gUGuCGCUCGUGaC-CGCCAGGAGCUg -5'
28164 5' -58.7 NC_005887.1 + 16523 0.71 0.228769
Target:  5'- gCGCGGuCGAGCGCaUGcccgcgcgcacGCGGUUCUCGAUc -3'
miRNA:   3'- -GUGUC-GCUCGUG-AC-----------CGCCAGGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 37395 0.7 0.247393
Target:  5'- -uCAGCuGGCGCUGcGCGGUCg-CGACu -3'
miRNA:   3'- guGUCGcUCGUGAC-CGCCAGgaGCUG- -5'
28164 5' -58.7 NC_005887.1 + 7474 0.7 0.253874
Target:  5'- gGCGGCGGGUGCgaccgUGGCGaucGUCgUCGGCg -3'
miRNA:   3'- gUGUCGCUCGUG-----ACCGC---CAGgAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 36025 0.69 0.287659
Target:  5'- aGCAGCGucaccucGGCGCcGGCGaGgcgcaaggCCUCGACg -3'
miRNA:   3'- gUGUCGC-------UCGUGaCCGC-Ca-------GGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 17436 0.69 0.288384
Target:  5'- aACAGCGAGCccucgccgaACUGGCGGUUgUacuGCa -3'
miRNA:   3'- gUGUCGCUCG---------UGACCGCCAGgAgc-UG- -5'
28164 5' -58.7 NC_005887.1 + 480 0.69 0.288384
Target:  5'- aACAGCGGGCgGCgcGGCGcGUCUUCGcgGCg -3'
miRNA:   3'- gUGUCGCUCG-UGa-CCGC-CAGGAGC--UG- -5'
28164 5' -58.7 NC_005887.1 + 40539 0.69 0.295714
Target:  5'- gGCAGCGAcgacGguCUGGCGcucgcgcacgaGUUCUCGGCg -3'
miRNA:   3'- gUGUCGCU----CguGACCGC-----------CAGGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 17048 0.69 0.298686
Target:  5'- gCGCAGCG-GCACgcuugGGCGGacgccgucaugccgcUgCUCGACc -3'
miRNA:   3'- -GUGUCGCuCGUGa----CCGCC---------------AgGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 40825 0.69 0.303187
Target:  5'- gGCGGCGcgcGGCGCgccaacGGCGaucgCCUCGACg -3'
miRNA:   3'- gUGUCGC---UCGUGa-----CCGCca--GGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 26362 0.69 0.303187
Target:  5'- gACGGCG-GCAacaucCUuGCGGUCUUCGGCc -3'
miRNA:   3'- gUGUCGCuCGU-----GAcCGCCAGGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 16060 0.68 0.317785
Target:  5'- uCGCGGCGGGU-CUGcGCGcGcacgacaUCCUCGACg -3'
miRNA:   3'- -GUGUCGCUCGuGAC-CGC-C-------AGGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 12114 0.68 0.326476
Target:  5'- uGCAGCGcGGCGcCUGuGuuGUCUUCGACg -3'
miRNA:   3'- gUGUCGC-UCGU-GAC-CgcCAGGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 5827 0.68 0.326476
Target:  5'- uCGCGGCcAGCGCcuucGCGG-CCUCGGCc -3'
miRNA:   3'- -GUGUCGcUCGUGac--CGCCaGGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 1140 0.68 0.334528
Target:  5'- aCAuCAGUucGAGCAC--GCGGUCCuUCGACu -3'
miRNA:   3'- -GU-GUCG--CUCGUGacCGCCAGG-AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.