Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28164 | 5' | -58.7 | NC_005887.1 | + | 480 | 0.69 | 0.288384 |
Target: 5'- aACAGCGGGCgGCgcGGCGcGUCUUCGcgGCg -3' miRNA: 3'- gUGUCGCUCG-UGa-CCGC-CAGGAGC--UG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 1140 | 0.68 | 0.334528 |
Target: 5'- aCAuCAGUucGAGCAC--GCGGUCCuUCGACu -3' miRNA: 3'- -GU-GUCG--CUCGUGacCGCCAGG-AGCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 1230 | 0.66 | 0.42283 |
Target: 5'- --uGGCGGGCGCUGcGCGG-CgCUCaGCa -3' miRNA: 3'- gugUCGCUCGUGAC-CGCCaG-GAGcUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 3682 | 0.67 | 0.376941 |
Target: 5'- uCACGGcCGaAGCGCUGcGCGG-CCU-GGCg -3' miRNA: 3'- -GUGUC-GC-UCGUGAC-CGCCaGGAgCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 4384 | 0.68 | 0.334528 |
Target: 5'- uGCGGCauguccGGCAgCUGGcCGG-CCUCGGCg -3' miRNA: 3'- gUGUCGc-----UCGU-GACC-GCCaGGAGCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 4670 | 0.76 | 0.100292 |
Target: 5'- cCGCGGCGAGCAucuguugcauCUGcGCGGccugcgCCUCGGCg -3' miRNA: 3'- -GUGUCGCUCGU----------GAC-CGCCa-----GGAGCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 4738 | 0.67 | 0.385847 |
Target: 5'- cCGCcGCGAGCAauaccGGCGGUgCUuuugCGACg -3' miRNA: 3'- -GUGuCGCUCGUga---CCGCCAgGA----GCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 5498 | 0.67 | 0.368174 |
Target: 5'- -cCAGCGGGCGCgUGGUcgcgccGGUCgCUgCGGCg -3' miRNA: 3'- guGUCGCUCGUG-ACCG------CCAG-GA-GCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 5827 | 0.68 | 0.326476 |
Target: 5'- uCGCGGCcAGCGCcuucGCGG-CCUCGGCc -3' miRNA: 3'- -GUGUCGcUCGUGac--CGCCaGGAGCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 5944 | 0.66 | 0.410577 |
Target: 5'- --gGGCGAGgugaucgauaagcuCGCUGGCGcGUCCggCGAUg -3' miRNA: 3'- gugUCGCUC--------------GUGACCGC-CAGGa-GCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 7474 | 0.7 | 0.253874 |
Target: 5'- gGCGGCGGGUGCgaccgUGGCGaucGUCgUCGGCg -3' miRNA: 3'- gUGUCGCUCGUG-----ACCGC---CAGgAGCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 10762 | 0.67 | 0.368175 |
Target: 5'- gCGCGGCGGGUACgaggGGCaGUCgUgGAUc -3' miRNA: 3'- -GUGUCGCUCGUGa---CCGcCAGgAgCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 10778 | 0.73 | 0.156523 |
Target: 5'- aACAGCG-GCACcGcGCGGUCCaucgcguUCGACg -3' miRNA: 3'- gUGUCGCuCGUGaC-CGCCAGG-------AGCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 11387 | 0.74 | 0.125697 |
Target: 5'- gCGCAGCcgGAGCGCUGGCGG-CCggCGcCg -3' miRNA: 3'- -GUGUCG--CUCGUGACCGCCaGGa-GCuG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 11827 | 0.67 | 0.365572 |
Target: 5'- gGCGGCGgccuguucucgagcAGCACgGGCGGaucgUUUUCGACg -3' miRNA: 3'- gUGUCGC--------------UCGUGaCCGCC----AGGAGCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 12114 | 0.68 | 0.326476 |
Target: 5'- uGCAGCGcGGCGcCUGuGuuGUCUUCGACg -3' miRNA: 3'- gUGUCGC-UCGU-GAC-CgcCAGGAGCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 13676 | 0.66 | 0.451922 |
Target: 5'- -uCAGCG-GCGCgacgGGUGGgaUCUCGACc -3' miRNA: 3'- guGUCGCuCGUGa---CCGCCa-GGAGCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 14551 | 0.66 | 0.42283 |
Target: 5'- cCGCGGCGGGCACgaucUGcGCGaGgCC-CGACa -3' miRNA: 3'- -GUGUCGCUCGUG----AC-CGC-CaGGaGCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 16060 | 0.68 | 0.317785 |
Target: 5'- uCGCGGCGGGU-CUGcGCGcGcacgacaUCCUCGACg -3' miRNA: 3'- -GUGUCGCUCGuGAC-CGC-C-------AGGAGCUG- -5' |
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28164 | 5' | -58.7 | NC_005887.1 | + | 16523 | 0.71 | 0.228769 |
Target: 5'- gCGCGGuCGAGCGCaUGcccgcgcgcacGCGGUUCUCGAUc -3' miRNA: 3'- -GUGUC-GCUCGUG-AC-----------CGCCAGGAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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