miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28164 5' -58.7 NC_005887.1 + 28942 1.06 0.000479
Target:  5'- gACAGCGAGCACUGGCGGUCCUCGACu -3'
miRNA:   3'- gUGUCGCUCGUGACCGCCAGGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 37330 0.66 0.461861
Target:  5'- aGCAGCGccGGCACUGGCaucGGUCgC-CG-Ca -3'
miRNA:   3'- gUGUCGC--UCGUGACCG---CCAG-GaGCuG- -5'
28164 5' -58.7 NC_005887.1 + 30806 0.66 0.461861
Target:  5'- aAUGGCGcGCACc-GCGG-CCUCGGCc -3'
miRNA:   3'- gUGUCGCuCGUGacCGCCaGGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 34696 0.66 0.451922
Target:  5'- aGCAGCGGGCggccgucgucgcGCUuGCGGUgCgCGGCg -3'
miRNA:   3'- gUGUCGCUCG------------UGAcCGCCAgGaGCUG- -5'
28164 5' -58.7 NC_005887.1 + 13676 0.66 0.451922
Target:  5'- -uCAGCG-GCGCgacgGGUGGgaUCUCGACc -3'
miRNA:   3'- guGUCGCuCGUGa---CCGCCa-GGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 36087 0.66 0.442102
Target:  5'- gUACAGCu-GCACguaGGCGGccauuUCCUCGuCg -3'
miRNA:   3'- -GUGUCGcuCGUGa--CCGCC-----AGGAGCuG- -5'
28164 5' -58.7 NC_005887.1 + 1230 0.66 0.42283
Target:  5'- --uGGCGGGCGCUGcGCGG-CgCUCaGCa -3'
miRNA:   3'- gugUCGCUCGUGAC-CGCCaG-GAGcUG- -5'
28164 5' -58.7 NC_005887.1 + 5944 0.66 0.410577
Target:  5'- --gGGCGAGgugaucgauaagcuCGCUGGCGcGUCCggCGAUg -3'
miRNA:   3'- gugUCGCUC--------------GUGACCGC-CAGGa-GCUG- -5'
28164 5' -58.7 NC_005887.1 + 4738 0.67 0.385847
Target:  5'- cCGCcGCGAGCAauaccGGCGGUgCUuuugCGACg -3'
miRNA:   3'- -GUGuCGCUCGUga---CCGCCAgGA----GCUG- -5'
28164 5' -58.7 NC_005887.1 + 10762 0.67 0.368175
Target:  5'- gCGCGGCGGGUACgaggGGCaGUCgUgGAUc -3'
miRNA:   3'- -GUGUCGCUCGUGa---CCGcCAGgAgCUG- -5'
28164 5' -58.7 NC_005887.1 + 11827 0.67 0.365572
Target:  5'- gGCGGCGgccuguucucgagcAGCACgGGCGGaucgUUUUCGACg -3'
miRNA:   3'- gUGUCGC--------------UCGUGaCCGCC----AGGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 11387 0.74 0.125697
Target:  5'- gCGCAGCcgGAGCGCUGGCGG-CCggCGcCg -3'
miRNA:   3'- -GUGUCG--CUCGUGACCGCCaGGa-GCuG- -5'
28164 5' -58.7 NC_005887.1 + 35569 0.72 0.17039
Target:  5'- uGCGGCGAGCGCcgGGCacacGG-CCUUGGCc -3'
miRNA:   3'- gUGUCGCUCGUGa-CCG----CCaGGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 33611 0.71 0.217022
Target:  5'- uGC-GCGAGCGCgGcGUGGUCUUCGAa -3'
miRNA:   3'- gUGuCGCUCGUGaC-CGCCAGGAGCUg -5'
28164 5' -58.7 NC_005887.1 + 37395 0.7 0.247393
Target:  5'- -uCAGCuGGCGCUGcGCGGUCg-CGACu -3'
miRNA:   3'- guGUCGcUCGUGAC-CGCCAGgaGCUG- -5'
28164 5' -58.7 NC_005887.1 + 36025 0.69 0.287659
Target:  5'- aGCAGCGucaccucGGCGCcGGCGaGgcgcaaggCCUCGACg -3'
miRNA:   3'- gUGUCGC-------UCGUGaCCGC-Ca-------GGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 40539 0.69 0.295714
Target:  5'- gGCAGCGAcgacGguCUGGCGcucgcgcacgaGUUCUCGGCg -3'
miRNA:   3'- gUGUCGCU----CguGACCGC-----------CAGGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 17048 0.69 0.298686
Target:  5'- gCGCAGCG-GCACgcuugGGCGGacgccgucaugccgcUgCUCGACc -3'
miRNA:   3'- -GUGUCGCuCGUGa----CCGCC---------------AgGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 4670 0.76 0.100292
Target:  5'- cCGCGGCGAGCAucuguugcauCUGcGCGGccugcgCCUCGGCg -3'
miRNA:   3'- -GUGUCGCUCGU----------GAC-CGCCa-----GGAGCUG- -5'
28164 5' -58.7 NC_005887.1 + 23502 0.66 0.413385
Target:  5'- aGCGGCGGGa--UGGCGGgcggCUgCGACg -3'
miRNA:   3'- gUGUCGCUCgugACCGCCa---GGaGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.