Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28167 | 5' | -62.7 | NC_005887.1 | + | 29415 | 0.67 | 0.230895 |
Target: 5'- -cAGGCucgacaGCuCGUCGGCCGAGuaguCGUCGg -3' miRNA: 3'- caUCCGc-----CG-GCAGCCGGCUCu---GCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 11307 | 0.67 | 0.230895 |
Target: 5'- ---aGCGGCCGgcUCGGCagCGAG-CGCCGc -3' miRNA: 3'- caucCGCCGGC--AGCCG--GCUCuGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 25021 | 0.67 | 0.230895 |
Target: 5'- --cGGCGGCCGcCGGCCa----GCCGg -3' miRNA: 3'- cauCCGCCGGCaGCCGGcucugCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 17535 | 0.68 | 0.225094 |
Target: 5'- -aGGGCGGCaugaCGUCGGUCGGcGCGUa- -3' miRNA: 3'- caUCCGCCG----GCAGCCGGCUcUGCGgu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 41609 | 0.68 | 0.225094 |
Target: 5'- gGUGcGGCGGCCGgcgCGGCCcguGAGGaucUGCUg -3' miRNA: 3'- -CAU-CCGCCGGCa--GCCGG---CUCU---GCGGu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 5494 | 0.68 | 0.224521 |
Target: 5'- -cGGGCGcGUgGUCGcGCCGGucgcugcGGCGCCGc -3' miRNA: 3'- caUCCGC-CGgCAGC-CGGCU-------CUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 39621 | 0.68 | 0.216069 |
Target: 5'- uUAGGCGGgcagcCCGUCGcGCgGAuugggguacagagccGGCGCCAg -3' miRNA: 3'- cAUCCGCC-----GGCAGC-CGgCU---------------CUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 40099 | 0.68 | 0.213862 |
Target: 5'- cGUAGGcCGGCCGccUCGaGCC---GCGCCAu -3' miRNA: 3'- -CAUCC-GCCGGC--AGC-CGGcucUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 9271 | 0.69 | 0.187874 |
Target: 5'- uGUGcaCGGCgGUCGGCaCGGcGACGCCGc -3' miRNA: 3'- -CAUccGCCGgCAGCCG-GCU-CUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 11098 | 0.69 | 0.18592 |
Target: 5'- cGUGGcGCaucGGCUGgugcgcgcgaagcUGGCCGAGGCGCCGu -3' miRNA: 3'- -CAUC-CG---CCGGCa------------GCCGGCUCUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 19983 | 0.69 | 0.183022 |
Target: 5'- -cGGGCGGCagCGUCagGGUCGAauagagguaGACGCCGg -3' miRNA: 3'- caUCCGCCG--GCAG--CCGGCU---------CUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 27209 | 0.69 | 0.183022 |
Target: 5'- ---cGUGGCCGuUCGGCCGcguGAuCGCCGa -3' miRNA: 3'- caucCGCCGGC-AGCCGGCu--CU-GCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 12637 | 0.69 | 0.167789 |
Target: 5'- --cGGCGgacaccaugcgcauGCCGgCGGCCGucGACGCCAc -3' miRNA: 3'- cauCCGC--------------CGGCaGCCGGCu-CUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 5562 | 0.7 | 0.160393 |
Target: 5'- ---uGCGGCCGgugcugCGGCCGGugcuGCGCCAu -3' miRNA: 3'- caucCGCCGGCa-----GCCGGCUc---UGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 13194 | 0.7 | 0.14687 |
Target: 5'- --cGaGCaGGCCGcCGGCCGAcgugugucgcugcuGACGCCAg -3' miRNA: 3'- cauC-CG-CCGGCaGCCGGCU--------------CUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 17746 | 0.7 | 0.144139 |
Target: 5'- --cGGCacGGCCGcgCGGCUGAuGGCGCCc -3' miRNA: 3'- cauCCG--CCGGCa-GCCGGCU-CUGCGGu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 14530 | 0.71 | 0.136589 |
Target: 5'- -aGGcGCGGCCGUCGGCgGc-GCGUCGa -3' miRNA: 3'- caUC-CGCCGGCAGCCGgCucUGCGGU- -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 23247 | 0.71 | 0.136589 |
Target: 5'- --cGGCGGCgGUCGGCgCGcaaaAGGCGCa- -3' miRNA: 3'- cauCCGCCGgCAGCCG-GC----UCUGCGgu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 7339 | 0.71 | 0.132951 |
Target: 5'- -cGGGCGGCCGg-GGCCGAuGuCGCg- -3' miRNA: 3'- caUCCGCCGGCagCCGGCU-CuGCGgu -5' |
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28167 | 5' | -62.7 | NC_005887.1 | + | 10165 | 0.71 | 0.125943 |
Target: 5'- -cAGcUGGCCGUCGGCgCGGGcCGCCc -3' miRNA: 3'- caUCcGCCGGCAGCCG-GCUCuGCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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