miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28168 3' -52.4 NC_005887.1 + 18705 0.66 0.832624
Target:  5'- gGAacaGCG-UCGAcaGCAgcggGCCGCCGaUCg -3'
miRNA:   3'- gCUg--CGCuAGCU--UGUa---CGGUGGCaAG- -5'
28168 3' -52.4 NC_005887.1 + 21104 0.66 0.832624
Target:  5'- uCGGCGCGGUCGccgcaAACAcggUGCuCGCCa--- -3'
miRNA:   3'- -GCUGCGCUAGC-----UUGU---ACG-GUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 14649 0.66 0.832624
Target:  5'- cCGGCGCGGUgcuGCccGUCGCCGgUUCg -3'
miRNA:   3'- -GCUGCGCUAgcuUGuaCGGUGGC-AAG- -5'
28168 3' -52.4 NC_005887.1 + 13543 0.66 0.832624
Target:  5'- gCGaAUGCGAUCGGcgauGCGcUGCCGCCc--- -3'
miRNA:   3'- -GC-UGCGCUAGCU----UGU-ACGGUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 26832 0.66 0.832624
Target:  5'- gCGuGCGCGAgCGGGCGcgucUGCCgguaGCCGUUg -3'
miRNA:   3'- -GC-UGCGCUaGCUUGU----ACGG----UGGCAAg -5'
28168 3' -52.4 NC_005887.1 + 35993 0.66 0.823273
Target:  5'- uGAUGUGcUCGAuggACA-GCCGuuGUUCa -3'
miRNA:   3'- gCUGCGCuAGCU---UGUaCGGUggCAAG- -5'
28168 3' -52.4 NC_005887.1 + 22551 0.66 0.823273
Target:  5'- cCGucCGCGAUCG-ACAUGCCcgagacgcugauGCUGgUCg -3'
miRNA:   3'- -GCu-GCGCUAGCuUGUACGG------------UGGCaAG- -5'
28168 3' -52.4 NC_005887.1 + 27818 0.66 0.823273
Target:  5'- cCGGCGCGcUCGGcAUcgGCCAcuuCCGUcUCu -3'
miRNA:   3'- -GCUGCGCuAGCU-UGuaCGGU---GGCA-AG- -5'
28168 3' -52.4 NC_005887.1 + 41337 0.66 0.813708
Target:  5'- uGACGcCGGUUGAguacgauccGCGcGCCGCCGg-- -3'
miRNA:   3'- gCUGC-GCUAGCU---------UGUaCGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 26340 0.66 0.813708
Target:  5'- cCGGCGCuggccggguGcgCGAACAucaccgggaucuUGCCAgCGUUCc -3'
miRNA:   3'- -GCUGCG---------CuaGCUUGU------------ACGGUgGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 13587 0.66 0.813708
Target:  5'- --uCGCGAUCGuggcgcGCAUGCCcguGCCGg-- -3'
miRNA:   3'- gcuGCGCUAGCu-----UGUACGG---UGGCaag -5'
28168 3' -52.4 NC_005887.1 + 39467 0.66 0.813708
Target:  5'- cCGaACGCGGUCGcgaccACGguugcGCCGCCGgccUCg -3'
miRNA:   3'- -GC-UGCGCUAGCu----UGUa----CGGUGGCa--AG- -5'
28168 3' -52.4 NC_005887.1 + 24628 0.66 0.80394
Target:  5'- -cGCGUGGUCGAACAgcugcGUCACgGUg- -3'
miRNA:   3'- gcUGCGCUAGCUUGUa----CGGUGgCAag -5'
28168 3' -52.4 NC_005887.1 + 25587 0.66 0.80394
Target:  5'- uCGGCgGCGA-CGAuUAUGCCGCCa--- -3'
miRNA:   3'- -GCUG-CGCUaGCUuGUACGGUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 11851 0.66 0.80394
Target:  5'- cCGACGCcgcCGAGCAgcgaggacGCCGCCGa-- -3'
miRNA:   3'- -GCUGCGcuaGCUUGUa-------CGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 2890 0.66 0.79398
Target:  5'- aGGCGaCGA-CGGACAcgucgGCCGCCGc-- -3'
miRNA:   3'- gCUGC-GCUaGCUUGUa----CGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 17460 0.66 0.787916
Target:  5'- cCGACGUGAUCGAccagcgcguucaacaGCGaGCCcucGCCGa-- -3'
miRNA:   3'- -GCUGCGCUAGCU---------------UGUaCGG---UGGCaag -5'
28168 3' -52.4 NC_005887.1 + 21385 0.66 0.783839
Target:  5'- cCGAUGCGGUCGGcgcgguggGCGUGCC--CGUg- -3'
miRNA:   3'- -GCUGCGCUAGCU--------UGUACGGugGCAag -5'
28168 3' -52.4 NC_005887.1 + 24991 0.66 0.783839
Target:  5'- gCGuCGCGAUCGAcaACGgUGCCGauCCGg-- -3'
miRNA:   3'- -GCuGCGCUAGCU--UGU-ACGGU--GGCaag -5'
28168 3' -52.4 NC_005887.1 + 41843 0.66 0.783839
Target:  5'- -cACGCGAUCuGGCGgcgccugaUGCUcguGCCGUUCg -3'
miRNA:   3'- gcUGCGCUAGcUUGU--------ACGG---UGGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.