miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2817 5' -62.9 NC_001491.2 + 116708 0.66 0.608048
Target:  5'- uGCCGcgGCC-GCGGcCGCuccggggaccaGGGCgCCCAg -3'
miRNA:   3'- gCGGCuaCGGuCGUC-GCG-----------CCUG-GGGU- -5'
2817 5' -62.9 NC_001491.2 + 123455 0.66 0.608048
Target:  5'- cCGCC-AUGUUgAGUAGCGCGG-CCCa- -3'
miRNA:   3'- -GCGGcUACGG-UCGUCGCGCCuGGGgu -5'
2817 5' -62.9 NC_001491.2 + 137747 0.66 0.578732
Target:  5'- cCGCCcg-GCgGGCGGCgggcgcccGCGGGuCCCCGg -3'
miRNA:   3'- -GCGGcuaCGgUCGUCG--------CGCCU-GGGGU- -5'
2817 5' -62.9 NC_001491.2 + 147972 0.66 0.578732
Target:  5'- gGCC---GCCAGCAGCGCcGAgaguCCCCc -3'
miRNA:   3'- gCGGcuaCGGUCGUCGCGcCU----GGGGu -5'
2817 5' -62.9 NC_001491.2 + 148787 0.66 0.569022
Target:  5'- cCGCgGG-GCuCGGCGGCGgGGAgCCUCGg -3'
miRNA:   3'- -GCGgCUaCG-GUCGUCGCgCCU-GGGGU- -5'
2817 5' -62.9 NC_001491.2 + 65485 0.67 0.549731
Target:  5'- gCGCCacaGGUGCCAGC--CGgGGaaGCCCCGg -3'
miRNA:   3'- -GCGG---CUACGGUCGucGCgCC--UGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 17669 0.67 0.549731
Target:  5'- gGCCGccGUa--CAGCGCGG-CCCCGg -3'
miRNA:   3'- gCGGCuaCGgucGUCGCGCCuGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 13927 0.67 0.530647
Target:  5'- gCGCCGggGCUGGCGGCcuuggGCGGuggcaGCgCCAg -3'
miRNA:   3'- -GCGGCuaCGGUCGUCG-----CGCC-----UGgGGU- -5'
2817 5' -62.9 NC_001491.2 + 147744 0.67 0.521195
Target:  5'- gGCCGGgggGCC-GCuGCaGCGGGCCgCGa -3'
miRNA:   3'- gCGGCUa--CGGuCGuCG-CGCCUGGgGU- -5'
2817 5' -62.9 NC_001491.2 + 114957 0.67 0.521195
Target:  5'- cCGCgGGUcGCCuGCGccguGCGCuGGCCCCGg -3'
miRNA:   3'- -GCGgCUA-CGGuCGU----CGCGcCUGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 146503 0.67 0.511809
Target:  5'- gGCCGcgGCCgcGGCAGCcuugcguCGGGgCCCGa -3'
miRNA:   3'- gCGGCuaCGG--UCGUCGc------GCCUgGGGU- -5'
2817 5' -62.9 NC_001491.2 + 97218 0.67 0.502494
Target:  5'- gCGCCugaaGAUGCCcugGGUGGUGCGGAUCUg- -3'
miRNA:   3'- -GCGG----CUACGG---UCGUCGCGCCUGGGgu -5'
2817 5' -62.9 NC_001491.2 + 145375 0.67 0.502494
Target:  5'- gCGCCGGaG-CGGCAGCucuucggggugGCGG-CCCCAg -3'
miRNA:   3'- -GCGGCUaCgGUCGUCG-----------CGCCuGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 140130 0.67 0.502494
Target:  5'- gCGCCG-UGUCGGCGGaggcaGCGGacgcGCUCCGg -3'
miRNA:   3'- -GCGGCuACGGUCGUCg----CGCC----UGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 66926 0.68 0.484092
Target:  5'- aGCUGGgugcgguuuuaGCCA-CGGCuGCGGGCCCCGa -3'
miRNA:   3'- gCGGCUa----------CGGUcGUCG-CGCCUGGGGU- -5'
2817 5' -62.9 NC_001491.2 + 148102 0.68 0.484092
Target:  5'- aGCCGGUgaagGCCAGguccccggucgaCAGCaGCaGGACCCCc -3'
miRNA:   3'- gCGGCUA----CGGUC------------GUCG-CG-CCUGGGGu -5'
2817 5' -62.9 NC_001491.2 + 144891 0.68 0.466019
Target:  5'- uGCCGGggacGCCGGCuGgGCGGcaGCCgCCGg -3'
miRNA:   3'- gCGGCUa---CGGUCGuCgCGCC--UGG-GGU- -5'
2817 5' -62.9 NC_001491.2 + 58822 0.68 0.466019
Target:  5'- gGCCaGGUGCU-GC-GUGCGGGCuCCCAa -3'
miRNA:   3'- gCGG-CUACGGuCGuCGCGCCUG-GGGU- -5'
2817 5' -62.9 NC_001491.2 + 31900 0.68 0.448303
Target:  5'- aGUCGGUGUgAGC--CGCGGugCCCGc -3'
miRNA:   3'- gCGGCUACGgUCGucGCGCCugGGGU- -5'
2817 5' -62.9 NC_001491.2 + 118627 0.68 0.445677
Target:  5'- aCGCCaugGCCAGcCAGCGCagcgacuucgccccGGACCUCu -3'
miRNA:   3'- -GCGGcuaCGGUC-GUCGCG--------------CCUGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.