miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28177 5' -51.8 NC_005887.1 + 38817 1.07 0.001656
Target:  5'- aCAACGCGCAGCACAAAGCCAUGACUAc -3'
miRNA:   3'- -GUUGCGCGUCGUGUUUCGGUACUGAU- -5'
28177 5' -51.8 NC_005887.1 + 18244 0.75 0.291832
Target:  5'- -cACGCGCAGCACGgccaaGGGCCAcaUGAUg- -3'
miRNA:   3'- guUGCGCGUCGUGU-----UUCGGU--ACUGau -5'
28177 5' -51.8 NC_005887.1 + 3620 0.75 0.291832
Target:  5'- --cCGCGCAGCGCuucGGCCGUGAa-- -3'
miRNA:   3'- guuGCGCGUCGUGuu-UCGGUACUgau -5'
28177 5' -51.8 NC_005887.1 + 22030 0.74 0.307784
Target:  5'- uGGCGCGUAGCGCucgaacaagaaGGAGCCGauaUGGCUGa -3'
miRNA:   3'- gUUGCGCGUCGUG-----------UUUCGGU---ACUGAU- -5'
28177 5' -51.8 NC_005887.1 + 11426 0.74 0.316007
Target:  5'- gAGCGCGCuguGCACAAGGCgAUGccgcGCUGg -3'
miRNA:   3'- gUUGCGCGu--CGUGUUUCGgUAC----UGAU- -5'
28177 5' -51.8 NC_005887.1 + 31011 0.73 0.367861
Target:  5'- gCGugGCGCGGCGCAggccacuauucgcAGGCCGcGGCUu -3'
miRNA:   3'- -GUugCGCGUCGUGU-------------UUCGGUaCUGAu -5'
28177 5' -51.8 NC_005887.1 + 963 0.73 0.387676
Target:  5'- aGGCGUGCAGCACGAGGUgAUcgccGACa- -3'
miRNA:   3'- gUUGCGCGUCGUGUUUCGgUA----CUGau -5'
28177 5' -51.8 NC_005887.1 + 11552 0.73 0.387676
Target:  5'- uCGGCGCGCAGCGCGcGGCgGUcGCg- -3'
miRNA:   3'- -GUUGCGCGUCGUGUuUCGgUAcUGau -5'
28177 5' -51.8 NC_005887.1 + 34404 0.73 0.391529
Target:  5'- uCAGCGCGCGGUuacagauuccgacuuGCGAcGCCAUGugUc -3'
miRNA:   3'- -GUUGCGCGUCG---------------UGUUuCGGUACugAu -5'
28177 5' -51.8 NC_005887.1 + 18991 0.72 0.417173
Target:  5'- gCAugGCGCAGUcuaacCAAAggccgcGCCAUGACUGu -3'
miRNA:   3'- -GUugCGCGUCGu----GUUU------CGGUACUGAU- -5'
28177 5' -51.8 NC_005887.1 + 26402 0.72 0.437582
Target:  5'- gCGGCGUGCGGCGCGuGGCCGgcGCa- -3'
miRNA:   3'- -GUUGCGCGUCGUGUuUCGGUacUGau -5'
28177 5' -51.8 NC_005887.1 + 26235 0.71 0.469236
Target:  5'- -uGCGCGCGGCGCAgcGCCAccgGAa-- -3'
miRNA:   3'- guUGCGCGUCGUGUuuCGGUa--CUgau -5'
28177 5' -51.8 NC_005887.1 + 3021 0.71 0.480046
Target:  5'- cCAGCGcCGCGG-GCAAAGCCAUG-CUc -3'
miRNA:   3'- -GUUGC-GCGUCgUGUUUCGGUACuGAu -5'
28177 5' -51.8 NC_005887.1 + 29658 0.71 0.502021
Target:  5'- -cACGCGCGGCGCGAgguAGCaCAgcUGGCg- -3'
miRNA:   3'- guUGCGCGUCGUGUU---UCG-GU--ACUGau -5'
28177 5' -51.8 NC_005887.1 + 27767 0.7 0.524425
Target:  5'- gAGCGCGcCGGCGagguaGAGcGCCAUGACg- -3'
miRNA:   3'- gUUGCGC-GUCGUg----UUU-CGGUACUGau -5'
28177 5' -51.8 NC_005887.1 + 3633 0.7 0.524425
Target:  5'- gCGAgGCGCAGCACcguAGCCugGUGAUc- -3'
miRNA:   3'- -GUUgCGCGUCGUGuu-UCGG--UACUGau -5'
28177 5' -51.8 NC_005887.1 + 1154 0.7 0.558704
Target:  5'- aCGACGCGCGGguCGGaugcAGCCA-GGCg- -3'
miRNA:   3'- -GUUGCGCGUCguGUU----UCGGUaCUGau -5'
28177 5' -51.8 NC_005887.1 + 16565 0.7 0.558704
Target:  5'- -uGCGUGCAGC-CAAGGCagcugGACUGu -3'
miRNA:   3'- guUGCGCGUCGuGUUUCGgua--CUGAU- -5'
28177 5' -51.8 NC_005887.1 + 11296 0.69 0.590077
Target:  5'- aGGCGCGCAGCugAuccagcuguucugcAAGCCGcGGCc- -3'
miRNA:   3'- gUUGCGCGUCGugU--------------UUCGGUaCUGau -5'
28177 5' -51.8 NC_005887.1 + 4785 0.69 0.593585
Target:  5'- uGACGC-CAGCcgGCGAGGCCGUG-CUc -3'
miRNA:   3'- gUUGCGcGUCG--UGUUUCGGUACuGAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.