miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28177 5' -51.8 NC_005887.1 + 154 0.66 0.755524
Target:  5'- -cGCGCGCAGCaauGCGacGAGCCAgcGCg- -3'
miRNA:   3'- guUGCGCGUCG---UGU--UUCGGUacUGau -5'
28177 5' -51.8 NC_005887.1 + 644 0.66 0.744445
Target:  5'- aAGCGCGCGGCGagcgcacGCgCAUGACc- -3'
miRNA:   3'- gUUGCGCGUCGUguuu---CG-GUACUGau -5'
28177 5' -51.8 NC_005887.1 + 963 0.73 0.387676
Target:  5'- aGGCGUGCAGCACGAGGUgAUcgccGACa- -3'
miRNA:   3'- gUUGCGCGUCGUGUUUCGgUA----CUGau -5'
28177 5' -51.8 NC_005887.1 + 1154 0.7 0.558704
Target:  5'- aCGACGCGCGGguCGGaugcAGCCA-GGCg- -3'
miRNA:   3'- -GUUGCGCGUCguGUU----UCGGUaCUGau -5'
28177 5' -51.8 NC_005887.1 + 1500 0.68 0.652309
Target:  5'- --uCGCGCGGCGC--GGCCGUG-Cg- -3'
miRNA:   3'- guuGCGCGUCGUGuuUCGGUACuGau -5'
28177 5' -51.8 NC_005887.1 + 1592 0.68 0.640558
Target:  5'- gCGGCGCGCGGCGC---GCCAacGGCg- -3'
miRNA:   3'- -GUUGCGCGUCGUGuuuCGGUa-CUGau -5'
28177 5' -51.8 NC_005887.1 + 2093 0.67 0.698971
Target:  5'- cCAGCG-GCAGCACGAacauauugccgaAGCCGUcGCUc -3'
miRNA:   3'- -GUUGCgCGUCGUGUU------------UCGGUAcUGAu -5'
28177 5' -51.8 NC_005887.1 + 2215 0.67 0.721912
Target:  5'- gCGGCGCGCAGCGCGcaccgcacGCUGUaGGCg- -3'
miRNA:   3'- -GUUGCGCGUCGUGUuu------CGGUA-CUGau -5'
28177 5' -51.8 NC_005887.1 + 2563 0.69 0.617041
Target:  5'- aCGACGCGCgcaacgaucGGCGCGAGcGCCGcGACc- -3'
miRNA:   3'- -GUUGCGCG---------UCGUGUUU-CGGUaCUGau -5'
28177 5' -51.8 NC_005887.1 + 3021 0.71 0.480046
Target:  5'- cCAGCGcCGCGG-GCAAAGCCAUG-CUc -3'
miRNA:   3'- -GUUGC-GCGUCgUGUUUCGGUACuGAu -5'
28177 5' -51.8 NC_005887.1 + 3620 0.75 0.291832
Target:  5'- --cCGCGCAGCGCuucGGCCGUGAa-- -3'
miRNA:   3'- guuGCGCGUCGUGuu-UCGGUACUgau -5'
28177 5' -51.8 NC_005887.1 + 3633 0.7 0.524425
Target:  5'- gCGAgGCGCAGCACcguAGCCugGUGAUc- -3'
miRNA:   3'- -GUUgCGCGUCGUGuu-UCGG--UACUGau -5'
28177 5' -51.8 NC_005887.1 + 4785 0.69 0.593585
Target:  5'- uGACGC-CAGCcgGCGAGGCCGUG-CUc -3'
miRNA:   3'- gUUGCGcGUCG--UGUUUCGGUACuGAu -5'
28177 5' -51.8 NC_005887.1 + 4954 0.68 0.633502
Target:  5'- aGACGCGCAGCucaacucccugaaggACGAGGCCcccaAUGAa-- -3'
miRNA:   3'- gUUGCGCGUCG---------------UGUUUCGG----UACUgau -5'
28177 5' -51.8 NC_005887.1 + 4959 0.66 0.741095
Target:  5'- gCGAcCGCGCAGCGCcagcugaaggagaaGGAGCCGacGCUGc -3'
miRNA:   3'- -GUU-GCGCGUCGUG--------------UUUCGGUacUGAU- -5'
28177 5' -51.8 NC_005887.1 + 5489 0.66 0.798263
Target:  5'- gAugGCGCAGCACc-GGCCGcaGCa- -3'
miRNA:   3'- gUugCGCGUCGUGuuUCGGUacUGau -5'
28177 5' -51.8 NC_005887.1 + 5499 0.67 0.698971
Target:  5'- aGGCGCGCgucgcgauccAGCGCAAGGCUGUcGaACUGc -3'
miRNA:   3'- gUUGCGCG----------UCGUGUUUCGGUA-C-UGAU- -5'
28177 5' -51.8 NC_005887.1 + 5721 0.66 0.798263
Target:  5'- aCGACGCGCAGgAgAAGGCgCGcGAUg- -3'
miRNA:   3'- -GUUGCGCGUCgUgUUUCG-GUaCUGau -5'
28177 5' -51.8 NC_005887.1 + 6878 0.66 0.787842
Target:  5'- cCAACGCGCAgGCGCugaucAAGUaCAUGAUc- -3'
miRNA:   3'- -GUUGCGCGU-CGUGu----UUCG-GUACUGau -5'
28177 5' -51.8 NC_005887.1 + 7032 0.68 0.652309
Target:  5'- gCGGCGCGCGGCAgUGGAGCgAUG-Ca- -3'
miRNA:   3'- -GUUGCGCGUCGU-GUUUCGgUACuGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.