miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28177 5' -51.8 NC_005887.1 + 644 0.66 0.744445
Target:  5'- aAGCGCGCGGCGagcgcacGCgCAUGACc- -3'
miRNA:   3'- gUUGCGCGUCGUguuu---CG-GUACUGau -5'
28177 5' -51.8 NC_005887.1 + 37613 0.68 0.628798
Target:  5'- -uGCGCGCGucacGCGCAuacaccAGGCCGUGugUu -3'
miRNA:   3'- guUGCGCGU----CGUGU------UUCGGUACugAu -5'
28177 5' -51.8 NC_005887.1 + 4954 0.68 0.633502
Target:  5'- aGACGCGCAGCucaacucccugaaggACGAGGCCcccaAUGAa-- -3'
miRNA:   3'- gUUGCGCGUCG---------------UGUUUCGG----UACUgau -5'
28177 5' -51.8 NC_005887.1 + 11459 0.68 0.63703
Target:  5'- gCAACGCGCAGCucgcgaacaaucagGCAGAGCag-GuCUAc -3'
miRNA:   3'- -GUUGCGCGUCG--------------UGUUUCGguaCuGAU- -5'
28177 5' -51.8 NC_005887.1 + 15620 0.68 0.640558
Target:  5'- --uCGCGCAGCAgGcGGCCG-GGCUc -3'
miRNA:   3'- guuGCGCGUCGUgUuUCGGUaCUGAu -5'
28177 5' -51.8 NC_005887.1 + 1500 0.68 0.652309
Target:  5'- --uCGCGCGGCGC--GGCCGUG-Cg- -3'
miRNA:   3'- guuGCGCGUCGUGuuUCGGUACuGau -5'
28177 5' -51.8 NC_005887.1 + 40530 0.67 0.698971
Target:  5'- gCGGCGCGCGGCAgCGAcgacGGUC-UGGCg- -3'
miRNA:   3'- -GUUGCGCGUCGU-GUU----UCGGuACUGau -5'
28177 5' -51.8 NC_005887.1 + 23256 0.67 0.721912
Target:  5'- uCGGCGCGCaaaaGGCGCA--GCuCGUGGCg- -3'
miRNA:   3'- -GUUGCGCG----UCGUGUuuCG-GUACUGau -5'
28177 5' -51.8 NC_005887.1 + 38219 0.67 0.733236
Target:  5'- -cGCGCGCAGCcuugcGCGuGGCCggGAUg- -3'
miRNA:   3'- guUGCGCGUCG-----UGUuUCGGuaCUGau -5'
28177 5' -51.8 NC_005887.1 + 24453 0.69 0.617041
Target:  5'- gGACaCGCAGCAUcAGGCCGuUGGCg- -3'
miRNA:   3'- gUUGcGCGUCGUGuUUCGGU-ACUGau -5'
28177 5' -51.8 NC_005887.1 + 4785 0.69 0.593585
Target:  5'- uGACGC-CAGCcgGCGAGGCCGUG-CUc -3'
miRNA:   3'- gUUGCGcGUCG--UGUUUCGGUACuGAu -5'
28177 5' -51.8 NC_005887.1 + 27767 0.7 0.524425
Target:  5'- gAGCGCGcCGGCGagguaGAGcGCCAUGACg- -3'
miRNA:   3'- gUUGCGC-GUCGUg----UUU-CGGUACUGau -5'
28177 5' -51.8 NC_005887.1 + 3620 0.75 0.291832
Target:  5'- --cCGCGCAGCGCuucGGCCGUGAa-- -3'
miRNA:   3'- guuGCGCGUCGUGuu-UCGGUACUgau -5'
28177 5' -51.8 NC_005887.1 + 22030 0.74 0.307784
Target:  5'- uGGCGCGUAGCGCucgaacaagaaGGAGCCGauaUGGCUGa -3'
miRNA:   3'- gUUGCGCGUCGUG-----------UUUCGGU---ACUGAU- -5'
28177 5' -51.8 NC_005887.1 + 31011 0.73 0.367861
Target:  5'- gCGugGCGCGGCGCAggccacuauucgcAGGCCGcGGCUu -3'
miRNA:   3'- -GUugCGCGUCGUGU-------------UUCGGUaCUGAu -5'
28177 5' -51.8 NC_005887.1 + 963 0.73 0.387676
Target:  5'- aGGCGUGCAGCACGAGGUgAUcgccGACa- -3'
miRNA:   3'- gUUGCGCGUCGUGUUUCGgUA----CUGau -5'
28177 5' -51.8 NC_005887.1 + 11552 0.73 0.387676
Target:  5'- uCGGCGCGCAGCGCGcGGCgGUcGCg- -3'
miRNA:   3'- -GUUGCGCGUCGUGUuUCGgUAcUGau -5'
28177 5' -51.8 NC_005887.1 + 18991 0.72 0.417173
Target:  5'- gCAugGCGCAGUcuaacCAAAggccgcGCCAUGACUGu -3'
miRNA:   3'- -GUugCGCGUCGu----GUUU------CGGUACUGAU- -5'
28177 5' -51.8 NC_005887.1 + 3021 0.71 0.480046
Target:  5'- cCAGCGcCGCGG-GCAAAGCCAUG-CUc -3'
miRNA:   3'- -GUUGC-GCGUCgUGUUUCGGUACuGAu -5'
28177 5' -51.8 NC_005887.1 + 29658 0.71 0.502021
Target:  5'- -cACGCGCGGCGCGAgguAGCaCAgcUGGCg- -3'
miRNA:   3'- guUGCGCGUCGUGUU---UCG-GU--ACUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.