Results 1 - 20 of 63 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 5721 | 0.66 | 0.798263 |
Target: 5'- aCGACGCGCAGgAgAAGGCgCGcGAUg- -3' miRNA: 3'- -GUUGCGCGUCgUgUUUCG-GUaCUGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 17472 | 0.68 | 0.652309 |
Target: 5'- gAGCGCGCGGCAUc-GGCCGccgccugGACg- -3' miRNA: 3'- gUUGCGCGUCGUGuuUCGGUa------CUGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 1592 | 0.68 | 0.640558 |
Target: 5'- gCGGCGCGCGGCGC---GCCAacGGCg- -3' miRNA: 3'- -GUUGCGCGUCGUGuuuCGGUa-CUGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 18244 | 0.75 | 0.291832 |
Target: 5'- -cACGCGCAGCACGgccaaGGGCCAcaUGAUg- -3' miRNA: 3'- guUGCGCGUCGUGU-----UUCGGU--ACUGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 39198 | 0.66 | 0.777236 |
Target: 5'- uCGAgGCGCGGCAuCAGguAGUCgAUGACg- -3' miRNA: 3'- -GUUgCGCGUCGU-GUU--UCGG-UACUGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 154 | 0.66 | 0.755524 |
Target: 5'- -cGCGCGCAGCaauGCGacGAGCCAgcGCg- -3' miRNA: 3'- guUGCGCGUCG---UGU--UUCGGUacUGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 41448 | 0.67 | 0.733236 |
Target: 5'- gCGACGCGgaucgaAGC-CGAGGCCGccUGACUc -3' miRNA: 3'- -GUUGCGCg-----UCGuGUUUCGGU--ACUGAu -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 7851 | 0.67 | 0.733236 |
Target: 5'- gGGCGUGCAGUACcacGGUCcgGGCg- -3' miRNA: 3'- gUUGCGCGUCGUGuu-UCGGuaCUGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 28355 | 0.67 | 0.720773 |
Target: 5'- aGGCGCGCGGCGCAuucuucgucGGGaacgucaggugcaCCGUGACc- -3' miRNA: 3'- gUUGCGCGUCGUGU---------UUC-------------GGUACUGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 7032 | 0.68 | 0.652309 |
Target: 5'- gCGGCGCGCGGCAgUGGAGCgAUG-Ca- -3' miRNA: 3'- -GUUGCGCGUCGU-GUUUCGgUACuGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 2093 | 0.67 | 0.698971 |
Target: 5'- cCAGCG-GCAGCACGAacauauugccgaAGCCGUcGCUc -3' miRNA: 3'- -GUUGCgCGUCGUGUU------------UCGGUAcUGAu -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 2215 | 0.67 | 0.721912 |
Target: 5'- gCGGCGCGCAGCGCGcaccgcacGCUGUaGGCg- -3' miRNA: 3'- -GUUGCGCGUCGUGUuu------CGGUA-CUGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 37213 | 0.66 | 0.798263 |
Target: 5'- cCGACGUcggGCAGCGCGGucauGCCGagcuUGGCg- -3' miRNA: 3'- -GUUGCG---CGUCGUGUUu---CGGU----ACUGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 29200 | 0.68 | 0.664038 |
Target: 5'- -cGCGCGCGGCaagcgacgagACGAGGCCcgGcACg- -3' miRNA: 3'- guUGCGCGUCG----------UGUUUCGGuaC-UGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 35550 | 0.66 | 0.798263 |
Target: 5'- cCAGuCGCGCAGCGUGAGGCCgAUGuCc- -3' miRNA: 3'- -GUU-GCGCGUCGUGUUUCGG-UACuGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 35073 | 0.67 | 0.721912 |
Target: 5'- aCAGCGgGCGGC-CGGGGCCgAUGuCg- -3' miRNA: 3'- -GUUGCgCGUCGuGUUUCGG-UACuGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 13958 | 0.68 | 0.652309 |
Target: 5'- gCGACGUGCgcgugacgacAGcCGCGAAGCCGUcGACg- -3' miRNA: 3'- -GUUGCGCG----------UC-GUGUUUCGGUA-CUGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 7991 | 0.68 | 0.652309 |
Target: 5'- -uACGCGgGGCGCucgucuccAGCCGUGGCc- -3' miRNA: 3'- guUGCGCgUCGUGuu------UCGGUACUGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 9565 | 0.66 | 0.798263 |
Target: 5'- gCGGCGCGCGccgauccuGCGCAcGAGCCGgcugcaUGGCg- -3' miRNA: 3'- -GUUGCGCGU--------CGUGU-UUCGGU------ACUGau -5' |
|||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 4959 | 0.66 | 0.741095 |
Target: 5'- gCGAcCGCGCAGCGCcagcugaaggagaaGGAGCCGacGCUGc -3' miRNA: 3'- -GUU-GCGCGUCGUG--------------UUUCGGUacUGAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home