miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28177 5' -51.8 NC_005887.1 + 963 0.73 0.387676
Target:  5'- aGGCGUGCAGCACGAGGUgAUcgccGACa- -3'
miRNA:   3'- gUUGCGCGUCGUGUUUCGgUA----CUGau -5'
28177 5' -51.8 NC_005887.1 + 11552 0.73 0.387676
Target:  5'- uCGGCGCGCAGCGCGcGGCgGUcGCg- -3'
miRNA:   3'- -GUUGCGCGUCGUGUuUCGgUAcUGau -5'
28177 5' -51.8 NC_005887.1 + 18991 0.72 0.417173
Target:  5'- gCAugGCGCAGUcuaacCAAAggccgcGCCAUGACUGu -3'
miRNA:   3'- -GUugCGCGUCGu----GUUU------CGGUACUGAU- -5'
28177 5' -51.8 NC_005887.1 + 3021 0.71 0.480046
Target:  5'- cCAGCGcCGCGG-GCAAAGCCAUG-CUc -3'
miRNA:   3'- -GUUGC-GCGUCgUGUUUCGGUACuGAu -5'
28177 5' -51.8 NC_005887.1 + 37613 0.68 0.628798
Target:  5'- -uGCGCGCGucacGCGCAuacaccAGGCCGUGugUu -3'
miRNA:   3'- guUGCGCGU----CGUGU------UUCGGUACugAu -5'
28177 5' -51.8 NC_005887.1 + 24453 0.69 0.617041
Target:  5'- gGACaCGCAGCAUcAGGCCGuUGGCg- -3'
miRNA:   3'- gUUGcGCGUCGUGuUUCGGU-ACUGau -5'
28177 5' -51.8 NC_005887.1 + 4785 0.69 0.593585
Target:  5'- uGACGC-CAGCcgGCGAGGCCGUG-CUc -3'
miRNA:   3'- gUUGCGcGUCG--UGUUUCGGUACuGAu -5'
28177 5' -51.8 NC_005887.1 + 27767 0.7 0.524425
Target:  5'- gAGCGCGcCGGCGagguaGAGcGCCAUGACg- -3'
miRNA:   3'- gUUGCGC-GUCGUg----UUU-CGGUACUGau -5'
28177 5' -51.8 NC_005887.1 + 29658 0.71 0.502021
Target:  5'- -cACGCGCGGCGCGAgguAGCaCAgcUGGCg- -3'
miRNA:   3'- guUGCGCGUCGUGUU---UCG-GU--ACUGau -5'
28177 5' -51.8 NC_005887.1 + 2215 0.67 0.721912
Target:  5'- gCGGCGCGCAGCGCGcaccgcacGCUGUaGGCg- -3'
miRNA:   3'- -GUUGCGCGUCGUGUuu------CGGUA-CUGau -5'
28177 5' -51.8 NC_005887.1 + 35073 0.67 0.721912
Target:  5'- aCAGCGgGCGGC-CGGGGCCgAUGuCg- -3'
miRNA:   3'- -GUUGCgCGUCGuGUUUCGG-UACuGau -5'
28177 5' -51.8 NC_005887.1 + 7851 0.67 0.733236
Target:  5'- gGGCGUGCAGUACcacGGUCcgGGCg- -3'
miRNA:   3'- gUUGCGCGUCGUGuu-UCGGuaCUGau -5'
28177 5' -51.8 NC_005887.1 + 41448 0.67 0.733236
Target:  5'- gCGACGCGgaucgaAGC-CGAGGCCGccUGACUc -3'
miRNA:   3'- -GUUGCGCg-----UCGuGUUUCGGU--ACUGAu -5'
28177 5' -51.8 NC_005887.1 + 4959 0.66 0.741095
Target:  5'- gCGAcCGCGCAGCGCcagcugaaggagaaGGAGCCGacGCUGc -3'
miRNA:   3'- -GUU-GCGCGUCGUG--------------UUUCGGUacUGAU- -5'
28177 5' -51.8 NC_005887.1 + 154 0.66 0.755524
Target:  5'- -cGCGCGCAGCaauGCGacGAGCCAgcGCg- -3'
miRNA:   3'- guUGCGCGUCG---UGU--UUCGGUacUGau -5'
28177 5' -51.8 NC_005887.1 + 39198 0.66 0.777236
Target:  5'- uCGAgGCGCGGCAuCAGguAGUCgAUGACg- -3'
miRNA:   3'- -GUUgCGCGUCGU-GUU--UCGG-UACUGau -5'
28177 5' -51.8 NC_005887.1 + 9565 0.66 0.798263
Target:  5'- gCGGCGCGCGccgauccuGCGCAcGAGCCGgcugcaUGGCg- -3'
miRNA:   3'- -GUUGCGCGU--------CGUGU-UUCGGU------ACUGau -5'
28177 5' -51.8 NC_005887.1 + 35550 0.66 0.798263
Target:  5'- cCAGuCGCGCAGCGUGAGGCCgAUGuCc- -3'
miRNA:   3'- -GUU-GCGCGUCGUGUUUCGG-UACuGau -5'
28177 5' -51.8 NC_005887.1 + 37213 0.66 0.798263
Target:  5'- cCGACGUcggGCAGCGCGGucauGCCGagcuUGGCg- -3'
miRNA:   3'- -GUUGCG---CGUCGUGUUu---CGGU----ACUGau -5'
28177 5' -51.8 NC_005887.1 + 18244 0.75 0.291832
Target:  5'- -cACGCGCAGCACGgccaaGGGCCAcaUGAUg- -3'
miRNA:   3'- guUGCGCGUCGUGU-----UUCGGU--ACUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.