miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28177 5' -51.8 NC_005887.1 + 7851 0.67 0.733236
Target:  5'- gGGCGUGCAGUACcacGGUCcgGGCg- -3'
miRNA:   3'- gUUGCGCGUCGUGuu-UCGGuaCUGau -5'
28177 5' -51.8 NC_005887.1 + 7991 0.68 0.652309
Target:  5'- -uACGCGgGGCGCucgucuccAGCCGUGGCc- -3'
miRNA:   3'- guUGCGCgUCGUGuu------UCGGUACUGau -5'
28177 5' -51.8 NC_005887.1 + 9565 0.66 0.798263
Target:  5'- gCGGCGCGCGccgauccuGCGCAcGAGCCGgcugcaUGGCg- -3'
miRNA:   3'- -GUUGCGCGU--------CGUGU-UUCGGU------ACUGau -5'
28177 5' -51.8 NC_005887.1 + 11097 0.66 0.744445
Target:  5'- gCGugGCGCAucggcuggugcGCGCGAAgcuggccgaggcGCCGUGGCg- -3'
miRNA:   3'- -GUugCGCGU-----------CGUGUUU------------CGGUACUGau -5'
28177 5' -51.8 NC_005887.1 + 11296 0.69 0.590077
Target:  5'- aGGCGCGCAGCugAuccagcuguucugcAAGCCGcGGCc- -3'
miRNA:   3'- gUUGCGCGUCGugU--------------UUCGGUaCUGau -5'
28177 5' -51.8 NC_005887.1 + 11426 0.74 0.316007
Target:  5'- gAGCGCGCuguGCACAAGGCgAUGccgcGCUGg -3'
miRNA:   3'- gUUGCGCGu--CGUGUUUCGgUAC----UGAU- -5'
28177 5' -51.8 NC_005887.1 + 11459 0.68 0.63703
Target:  5'- gCAACGCGCAGCucgcgaacaaucagGCAGAGCag-GuCUAc -3'
miRNA:   3'- -GUUGCGCGUCG--------------UGUUUCGguaCuGAU- -5'
28177 5' -51.8 NC_005887.1 + 11552 0.73 0.387676
Target:  5'- uCGGCGCGCAGCGCGcGGCgGUcGCg- -3'
miRNA:   3'- -GUUGCGCGUCGUGUuUCGgUAcUGau -5'
28177 5' -51.8 NC_005887.1 + 12102 0.66 0.744445
Target:  5'- cCGACGUGCuggccGCGCAGAagcGCCAgGACg- -3'
miRNA:   3'- -GUUGCGCGu----CGUGUUU---CGGUaCUGau -5'
28177 5' -51.8 NC_005887.1 + 12845 0.69 0.617041
Target:  5'- aCAACGCGCccGCcguCGAGGCCGccGGCUAc -3'
miRNA:   3'- -GUUGCGCGu-CGu--GUUUCGGUa-CUGAU- -5'
28177 5' -51.8 NC_005887.1 + 13958 0.68 0.652309
Target:  5'- gCGACGUGCgcgugacgacAGcCGCGAAGCCGUcGACg- -3'
miRNA:   3'- -GUUGCGCG----------UC-GUGUUUCGGUA-CUGau -5'
28177 5' -51.8 NC_005887.1 + 13965 0.66 0.787842
Target:  5'- gGGCGCGCGGuCACGGuGCaCcUGACg- -3'
miRNA:   3'- gUUGCGCGUC-GUGUUuCG-GuACUGau -5'
28177 5' -51.8 NC_005887.1 + 15018 0.68 0.627622
Target:  5'- -uGCGCGUGGCGCAGucgacguGGCCG-GACg- -3'
miRNA:   3'- guUGCGCGUCGUGUU-------UCGGUaCUGau -5'
28177 5' -51.8 NC_005887.1 + 15620 0.68 0.640558
Target:  5'- --uCGCGCAGCAgGcGGCCG-GGCUc -3'
miRNA:   3'- guuGCGCGUCGUgUuUCGGUaCUGAu -5'
28177 5' -51.8 NC_005887.1 + 16565 0.7 0.558704
Target:  5'- -uGCGUGCAGC-CAAGGCagcugGACUGu -3'
miRNA:   3'- guUGCGCGUCGuGUUUCGgua--CUGAU- -5'
28177 5' -51.8 NC_005887.1 + 17472 0.68 0.652309
Target:  5'- gAGCGCGCGGCAUc-GGCCGccgccugGACg- -3'
miRNA:   3'- gUUGCGCGUCGUGuuUCGGUa------CUGau -5'
28177 5' -51.8 NC_005887.1 + 17481 0.66 0.787842
Target:  5'- aGACGCagauGCAGCugAcGGCCGUG-Ca- -3'
miRNA:   3'- gUUGCG----CGUCGugUuUCGGUACuGau -5'
28177 5' -51.8 NC_005887.1 + 18244 0.75 0.291832
Target:  5'- -cACGCGCAGCACGgccaaGGGCCAcaUGAUg- -3'
miRNA:   3'- guUGCGCGUCGUGU-----UUCGGU--ACUGau -5'
28177 5' -51.8 NC_005887.1 + 18991 0.72 0.417173
Target:  5'- gCAugGCGCAGUcuaacCAAAggccgcGCCAUGACUGu -3'
miRNA:   3'- -GUugCGCGUCGu----GUUU------CGGUACUGAU- -5'
28177 5' -51.8 NC_005887.1 + 22030 0.74 0.307784
Target:  5'- uGGCGCGUAGCGCucgaacaagaaGGAGCCGauaUGGCUGa -3'
miRNA:   3'- gUUGCGCGUCGUG-----------UUUCGGU---ACUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.