miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28177 5' -51.8 NC_005887.1 + 2215 0.67 0.721912
Target:  5'- gCGGCGCGCAGCGCGcaccgcacGCUGUaGGCg- -3'
miRNA:   3'- -GUUGCGCGUCGUGUuu------CGGUA-CUGau -5'
28177 5' -51.8 NC_005887.1 + 35073 0.67 0.721912
Target:  5'- aCAGCGgGCGGC-CGGGGCCgAUGuCg- -3'
miRNA:   3'- -GUUGCgCGUCGuGUUUCGG-UACuGau -5'
28177 5' -51.8 NC_005887.1 + 28355 0.67 0.720773
Target:  5'- aGGCGCGCGGCGCAuucuucgucGGGaacgucaggugcaCCGUGACc- -3'
miRNA:   3'- gUUGCGCGUCGUGU---------UUC-------------GGUACUGau -5'
28177 5' -51.8 NC_005887.1 + 40530 0.67 0.698971
Target:  5'- gCGGCGCGCGGCAgCGAcgacGGUC-UGGCg- -3'
miRNA:   3'- -GUUGCGCGUCGU-GUU----UCGGuACUGau -5'
28177 5' -51.8 NC_005887.1 + 5499 0.67 0.698971
Target:  5'- aGGCGCGCgucgcgauccAGCGCAAGGCUGUcGaACUGc -3'
miRNA:   3'- gUUGCGCG----------UCGUGUUUCGGUA-C-UGAU- -5'
28177 5' -51.8 NC_005887.1 + 2093 0.67 0.698971
Target:  5'- cCAGCG-GCAGCACGAacauauugccgaAGCCGUcGCUc -3'
miRNA:   3'- -GUUGCgCGUCGUGUU------------UCGGUAcUGAu -5'
28177 5' -51.8 NC_005887.1 + 29200 0.68 0.664038
Target:  5'- -cGCGCGCGGCaagcgacgagACGAGGCCcgGcACg- -3'
miRNA:   3'- guUGCGCGUCG----------UGUUUCGGuaC-UGau -5'
28177 5' -51.8 NC_005887.1 + 17472 0.68 0.652309
Target:  5'- gAGCGCGCGGCAUc-GGCCGccgccugGACg- -3'
miRNA:   3'- gUUGCGCGUCGUGuuUCGGUa------CUGau -5'
28177 5' -51.8 NC_005887.1 + 13958 0.68 0.652309
Target:  5'- gCGACGUGCgcgugacgacAGcCGCGAAGCCGUcGACg- -3'
miRNA:   3'- -GUUGCGCG----------UC-GUGUUUCGGUA-CUGau -5'
28177 5' -51.8 NC_005887.1 + 7032 0.68 0.652309
Target:  5'- gCGGCGCGCGGCAgUGGAGCgAUG-Ca- -3'
miRNA:   3'- -GUUGCGCGUCGU-GUUUCGgUACuGau -5'
28177 5' -51.8 NC_005887.1 + 7991 0.68 0.652309
Target:  5'- -uACGCGgGGCGCucgucuccAGCCGUGGCc- -3'
miRNA:   3'- guUGCGCgUCGUGuu------UCGGUACUGau -5'
28177 5' -51.8 NC_005887.1 + 1500 0.68 0.652309
Target:  5'- --uCGCGCGGCGC--GGCCGUG-Cg- -3'
miRNA:   3'- guuGCGCGUCGUGuuUCGGUACuGau -5'
28177 5' -51.8 NC_005887.1 + 1592 0.68 0.640558
Target:  5'- gCGGCGCGCGGCGC---GCCAacGGCg- -3'
miRNA:   3'- -GUUGCGCGUCGUGuuuCGGUa-CUGau -5'
28177 5' -51.8 NC_005887.1 + 15620 0.68 0.640558
Target:  5'- --uCGCGCAGCAgGcGGCCG-GGCUc -3'
miRNA:   3'- guuGCGCGUCGUgUuUCGGUaCUGAu -5'
28177 5' -51.8 NC_005887.1 + 11459 0.68 0.63703
Target:  5'- gCAACGCGCAGCucgcgaacaaucagGCAGAGCag-GuCUAc -3'
miRNA:   3'- -GUUGCGCGUCG--------------UGUUUCGguaCuGAU- -5'
28177 5' -51.8 NC_005887.1 + 4954 0.68 0.633502
Target:  5'- aGACGCGCAGCucaacucccugaaggACGAGGCCcccaAUGAa-- -3'
miRNA:   3'- gUUGCGCGUCG---------------UGUUUCGG----UACUgau -5'
28177 5' -51.8 NC_005887.1 + 37613 0.68 0.628798
Target:  5'- -uGCGCGCGucacGCGCAuacaccAGGCCGUGugUu -3'
miRNA:   3'- guUGCGCGU----CGUGU------UUCGGUACugAu -5'
28177 5' -51.8 NC_005887.1 + 15018 0.68 0.627622
Target:  5'- -uGCGCGUGGCGCAGucgacguGGCCG-GACg- -3'
miRNA:   3'- guUGCGCGUCGUGUU-------UCGGUaCUGau -5'
28177 5' -51.8 NC_005887.1 + 27705 0.68 0.626446
Target:  5'- gCGACGgGCAGCACcgcgccggcuGCCGUGAg-- -3'
miRNA:   3'- -GUUGCgCGUCGUGuuu-------CGGUACUgau -5'
28177 5' -51.8 NC_005887.1 + 24453 0.69 0.617041
Target:  5'- gGACaCGCAGCAUcAGGCCGuUGGCg- -3'
miRNA:   3'- gUUGcGCGUCGUGuUUCGGU-ACUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.