miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28178 5' -56.3 NC_005887.1 + 7924 0.66 0.629437
Target:  5'- aCCGcu--CCGGaaacCGagGACGAGCUCGAc -3'
miRNA:   3'- -GGCuuacGGCC----GCagCUGCUCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 5351 0.68 0.490414
Target:  5'- gCGuAcgGCCuGcGCGUgcucgcCGGCGAGCUCGAc -3'
miRNA:   3'- gGC-UuaCGG-C-CGCA------GCUGCUCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 28458 0.69 0.460201
Target:  5'- aCGAAUGCCGaCG-CGcACGAGC-CGGu -3'
miRNA:   3'- gGCUUACGGCcGCaGC-UGCUCGaGCU- -5'
28178 5' -56.3 NC_005887.1 + 26845 0.75 0.189821
Target:  5'- uCCGGAaacugGCCGGCGUCcaucuGACGcgcggccAGCUCGAa -3'
miRNA:   3'- -GGCUUa----CGGCCGCAG-----CUGC-------UCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 33472 0.66 0.607552
Target:  5'- gCGAGcGCguaCGGCGUCG-CGAuCUCGAc -3'
miRNA:   3'- gGCUUaCG---GCCGCAGCuGCUcGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 30008 0.66 0.596636
Target:  5'- aCCGccugGCCGGCGagCGACGuacgcAGUUCGc -3'
miRNA:   3'- -GGCuua-CGGCCGCa-GCUGC-----UCGAGCu -5'
28178 5' -56.3 NC_005887.1 + 7411 0.67 0.553356
Target:  5'- gCCGAGUucgaaGCCGGCGaCGGCaAGUUCc- -3'
miRNA:   3'- -GGCUUA-----CGGCCGCaGCUGcUCGAGcu -5'
28178 5' -56.3 NC_005887.1 + 10307 0.67 0.552285
Target:  5'- uCCGucUGCgGGCGUCGGugccccgcacaucCGAGaUCGAa -3'
miRNA:   3'- -GGCuuACGgCCGCAGCU-------------GCUCgAGCU- -5'
28178 5' -56.3 NC_005887.1 + 41639 0.68 0.532056
Target:  5'- aCGAGaucaGCUGGUucacGUCGGCGAGCagcaUCGAc -3'
miRNA:   3'- gGCUUa---CGGCCG----CAGCUGCUCG----AGCU- -5'
28178 5' -56.3 NC_005887.1 + 26668 0.68 0.500689
Target:  5'- uCCGGccGCgCGGCGgugagcUGGuCGAGCUCGGc -3'
miRNA:   3'- -GGCUuaCG-GCCGCa-----GCU-GCUCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 1576 0.68 0.532056
Target:  5'- cUCGAccGCCGGC-UCGGCG-GCgcgCGGc -3'
miRNA:   3'- -GGCUuaCGGCCGcAGCUGCuCGa--GCU- -5'
28178 5' -56.3 NC_005887.1 + 20554 0.67 0.541607
Target:  5'- gCCGcggacgucguguuGAUGCCGGCGaUGAU--GCUCGAa -3'
miRNA:   3'- -GGC-------------UUACGGCCGCaGCUGcuCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 38392 0.66 0.618488
Target:  5'- gCGAGcaaCGGCGggUCGACGAGCUUc- -3'
miRNA:   3'- gGCUUacgGCCGC--AGCUGCUCGAGcu -5'
28178 5' -56.3 NC_005887.1 + 28035 0.68 0.521516
Target:  5'- cCUGcuUGUCGGCGUCGgccugcgcuuGCGGGUUCa- -3'
miRNA:   3'- -GGCuuACGGCCGCAGC----------UGCUCGAGcu -5'
28178 5' -56.3 NC_005887.1 + 30493 0.66 0.618488
Target:  5'- -aGAccGCCGaGCGUCGAaaaCGAuccgcccgugcuGCUCGAg -3'
miRNA:   3'- ggCUuaCGGC-CGCAGCU---GCU------------CGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 32855 0.67 0.542672
Target:  5'- uUCGGcagcAUGCCGGgGUCGGCcGGgUCGu -3'
miRNA:   3'- -GGCU----UACGGCCgCAGCUGcUCgAGCu -5'
28178 5' -56.3 NC_005887.1 + 40192 0.68 0.510018
Target:  5'- gCCGAaguccAUGCCGauccagaGCGgcugCGAcuucaCGAGCUCGAa -3'
miRNA:   3'- -GGCU-----UACGGC-------CGCa---GCU-----GCUCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 38041 0.69 0.470165
Target:  5'- uCCGGcagcugGCCGGCcUCGGCGAGgaugUCGAc -3'
miRNA:   3'- -GGCUua----CGGCCGcAGCUGCUCg---AGCU- -5'
28178 5' -56.3 NC_005887.1 + 34946 0.66 0.617394
Target:  5'- gCGggUGCgaccgUGGCGaucgucgUCGGCGAGCU-GAa -3'
miRNA:   3'- gGCuuACG-----GCCGC-------AGCUGCUCGAgCU- -5'
28178 5' -56.3 NC_005887.1 + 41362 0.67 0.585751
Target:  5'- aCGGcgGCCGGCaauuugcgcguGUCGGCGAucacCUCGu -3'
miRNA:   3'- gGCUuaCGGCCG-----------CAGCUGCUc---GAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.