miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28179 5' -57.7 NC_005887.1 + 6955 0.66 0.49249
Target:  5'- aGGCCGUgcgcgggcGCAUCGaGCAugAGcuguGCAGGCccGCg -3'
miRNA:   3'- aCCGGCG--------UGUAGC-CGU--UC----UGUCCG--UG- -5'
28179 5' -57.7 NC_005887.1 + 40963 0.66 0.49249
Target:  5'- gGGCCcaugaugaacgaGCGCGaCGcGCGGGACAGGauguaGCg -3'
miRNA:   3'- aCCGG------------CGUGUaGC-CGUUCUGUCCg----UG- -5'
28179 5' -57.7 NC_005887.1 + 41528 0.66 0.482063
Target:  5'- cGGCCGCG-AUCGcGCGAG-CAuGGCu- -3'
miRNA:   3'- aCCGGCGUgUAGC-CGUUCuGU-CCGug -5'
28179 5' -57.7 NC_005887.1 + 35060 0.66 0.482063
Target:  5'- aGGUCGCugcCGUCGuc--GGCGGGCGCg -3'
miRNA:   3'- aCCGGCGu--GUAGCcguuCUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 32714 0.66 0.482063
Target:  5'- -aGCCGCGCGguucacccaCGGCGGGguaGCGcGGCGCu -3'
miRNA:   3'- acCGGCGUGUa--------GCCGUUC---UGU-CCGUG- -5'
28179 5' -57.7 NC_005887.1 + 41512 0.66 0.482063
Target:  5'- cGGCaagucgacgGUGC-UCGGCAAGAUccgcgAGGCGCu -3'
miRNA:   3'- aCCGg--------CGUGuAGCCGUUCUG-----UCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 4399 0.66 0.482063
Target:  5'- aGGCaauGCGCGcCGGCgAAGGCGcGGCGa -3'
miRNA:   3'- aCCGg--CGUGUaGCCG-UUCUGU-CCGUg -5'
28179 5' -57.7 NC_005887.1 + 2190 0.66 0.475857
Target:  5'- cGGCCGCGgugAUCgGGCAGcgcaaaccgaugggcGGCuGGCGCa -3'
miRNA:   3'- aCCGGCGUg--UAG-CCGUU---------------CUGuCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 17674 0.66 0.471743
Target:  5'- -cGCCGCGC-UUGGC--GACGucGGCACg -3'
miRNA:   3'- acCGGCGUGuAGCCGuuCUGU--CCGUG- -5'
28179 5' -57.7 NC_005887.1 + 14203 0.66 0.471743
Target:  5'- cGGgCGCgGCcUCGGaCAGGGC-GGCGCc -3'
miRNA:   3'- aCCgGCG-UGuAGCC-GUUCUGuCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 10114 0.66 0.471743
Target:  5'- cGGCCaGCugAUCGGCu--GCAcGUACg -3'
miRNA:   3'- aCCGG-CGugUAGCCGuucUGUcCGUG- -5'
28179 5' -57.7 NC_005887.1 + 13165 0.66 0.470717
Target:  5'- aGGCCGCGCAgauccUCGcagcgcaGCAAGACAucCGCu -3'
miRNA:   3'- aCCGGCGUGU-----AGC-------CGUUCUGUccGUG- -5'
28179 5' -57.7 NC_005887.1 + 17402 0.66 0.461536
Target:  5'- cUGGUCGauCACGUCGGC--GGCAuGGCGa -3'
miRNA:   3'- -ACCGGC--GUGUAGCCGuuCUGU-CCGUg -5'
28179 5' -57.7 NC_005887.1 + 10030 0.66 0.461536
Target:  5'- cGGCCGCGC--UGGCAcGaACAgcGGCAUc -3'
miRNA:   3'- aCCGGCGUGuaGCCGUuC-UGU--CCGUG- -5'
28179 5' -57.7 NC_005887.1 + 16201 0.66 0.461536
Target:  5'- aGGCCGCGCugcgacCGGaCAc-GCAGGuCACg -3'
miRNA:   3'- aCCGGCGUGua----GCC-GUucUGUCC-GUG- -5'
28179 5' -57.7 NC_005887.1 + 18713 0.66 0.461536
Target:  5'- aGGacaCGCACAUCGGCGccgacuugcugaAGAUc-GCGCa -3'
miRNA:   3'- aCCg--GCGUGUAGCCGU------------UCUGucCGUG- -5'
28179 5' -57.7 NC_005887.1 + 15615 0.66 0.461536
Target:  5'- gGGCguCGCGCAgcaggCGGCcGGGCucgccgaucaGGGCGCc -3'
miRNA:   3'- aCCG--GCGUGUa----GCCGuUCUG----------UCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 3789 0.66 0.451447
Target:  5'- gGGCCGCgaccGCAUCGuGCAGaACAGcggcuuucGCACc -3'
miRNA:   3'- aCCGGCG----UGUAGC-CGUUcUGUC--------CGUG- -5'
28179 5' -57.7 NC_005887.1 + 40670 0.66 0.451447
Target:  5'- cGGCCGCAcCAUCcuGCAccuGGCGcGCGCg -3'
miRNA:   3'- aCCGGCGU-GUAGc-CGUu--CUGUcCGUG- -5'
28179 5' -57.7 NC_005887.1 + 13595 0.66 0.451447
Target:  5'- aGGCCGCGuacuuCAUCgcugcuGGCAGcGCGGcGCGCg -3'
miRNA:   3'- aCCGGCGU-----GUAG------CCGUUcUGUC-CGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.