miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2818 5' -54.9 NC_001491.2 + 148958 0.67 0.917209
Target:  5'- gCGGAGGGccuGGGccacGCCGGgGcucGGGCCg -3'
miRNA:   3'- -GCCUCUCu--CUCuuu-UGGCCgC---UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 148136 0.66 0.933334
Target:  5'- gCGGAGcccaggcgcaGGcAGAGGuacucgacgcAGCCGGUGAaGGCCa -3'
miRNA:   3'- -GCCUC----------UC-UCUCUu---------UUGGCCGCU-CCGG- -5'
2818 5' -54.9 NC_001491.2 + 147938 0.67 0.922823
Target:  5'- uCGGAccaGAGGGGcucgcgccGAGAGCCGcCGGGGCg -3'
miRNA:   3'- -GCCU---CUCUCU--------CUUUUGGCcGCUCCGg -5'
2818 5' -54.9 NC_001491.2 + 147422 0.69 0.848464
Target:  5'- gCGGAcGAG-GAGAAGGaggccgaggcuCCGGCcuGGGCCg -3'
miRNA:   3'- -GCCU-CUCuCUCUUUU-----------GGCCGc-UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 147042 0.68 0.871393
Target:  5'- gCGGAGccGGAGAAGggcucgccGCCGGgCGAGGaCg -3'
miRNA:   3'- -GCCUCucUCUCUUU--------UGGCC-GCUCCgG- -5'
2818 5' -54.9 NC_001491.2 + 147004 0.66 0.938232
Target:  5'- -uGAGGGcugcuGGGAccGAGUCGGUGGGGCCa -3'
miRNA:   3'- gcCUCUCu----CUCU--UUUGGCCGCUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 146730 0.68 0.892399
Target:  5'- uCGuAGAGGGAGAGGGCCGccgucuccaGCccGGCCg -3'
miRNA:   3'- -GCcUCUCUCUCUUUUGGC---------CGcuCCGG- -5'
2818 5' -54.9 NC_001491.2 + 145455 0.66 0.946017
Target:  5'- cCGGAGGGAG-GAGgccuccucccgggcGGCUGggaGCGGGcGCCg -3'
miRNA:   3'- -GCCUCUCUCuCUU--------------UUGGC---CGCUC-CGG- -5'
2818 5' -54.9 NC_001491.2 + 145321 0.73 0.630563
Target:  5'- cCGGAG-GAcggcccGGGAGAGCCGGC--GGCCg -3'
miRNA:   3'- -GCCUCuCU------CUCUUUUGGCCGcuCCGG- -5'
2818 5' -54.9 NC_001491.2 + 145107 0.69 0.840421
Target:  5'- cCGGGGuGccGGGGAcccuccgcCCGGgGAGGCCg -3'
miRNA:   3'- -GCCUCuC--UCUCUuuu-----GGCCgCUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 144520 0.72 0.661203
Target:  5'- uCGGAagaccGAGaAGGGAAGGuuGGCGGguGGCCg -3'
miRNA:   3'- -GCCU-----CUC-UCUCUUUUggCCGCU--CCGG- -5'
2818 5' -54.9 NC_001491.2 + 143382 0.71 0.731468
Target:  5'- gGGAGGGGGAGggGGaaaGGUG-GGCg -3'
miRNA:   3'- gCCUCUCUCUCuuUUgg-CCGCuCCGg -5'
2818 5' -54.9 NC_001491.2 + 140490 0.72 0.691631
Target:  5'- -aGAGGGAGGGAGAGCUaugggaagGGUGGGGUg -3'
miRNA:   3'- gcCUCUCUCUCUUUUGG--------CCGCUCCGg -5'
2818 5' -54.9 NC_001491.2 + 140242 0.69 0.856312
Target:  5'- gCGGGGAcgGGGAcGggGGCgGGCGcggacGGGCUa -3'
miRNA:   3'- -GCCUCU--CUCU-CuuUUGgCCGC-----UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 139330 0.76 0.47183
Target:  5'- gGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139303 0.76 0.47183
Target:  5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139276 0.76 0.47183
Target:  5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139223 0.76 0.47183
Target:  5'- gGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139196 0.76 0.47183
Target:  5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139169 0.76 0.47183
Target:  5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.