miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28181 5' -63.4 NC_005887.1 + 28209 0.66 0.271074
Target:  5'- -aGCGCCGCGCGucucgGCGGuuUUGAGCa -3'
miRNA:   3'- acCGCGGCGCGCca---CGUCc-AGCUCGa -5'
28181 5' -63.4 NC_005887.1 + 41219 0.66 0.264433
Target:  5'- -cGCGCaCGCGCGGcuucGuCAGuUCGAGCUu -3'
miRNA:   3'- acCGCG-GCGCGCCa---C-GUCcAGCUCGA- -5'
28181 5' -63.4 NC_005887.1 + 30803 0.66 0.264433
Target:  5'- --cCGCCGCGCGcUGCGcGcCGAGCUg -3'
miRNA:   3'- accGCGGCGCGCcACGUcCaGCUCGA- -5'
28181 5' -63.4 NC_005887.1 + 20281 0.66 0.264433
Target:  5'- cGGcCGCCGUGCuGGuUGUGGGUUcAGCc -3'
miRNA:   3'- aCC-GCGGCGCG-CC-ACGUCCAGcUCGa -5'
28181 5' -63.4 NC_005887.1 + 29977 0.66 0.245302
Target:  5'- --cCGCCGCGCGGaUGCu-GUCGAGg- -3'
miRNA:   3'- accGCGGCGCGCC-ACGucCAGCUCga -5'
28181 5' -63.4 NC_005887.1 + 24366 0.66 0.245302
Target:  5'- cGGCgacgaaccacgaGCCGCGC--UGCAGGUCGAuCa -3'
miRNA:   3'- aCCG------------CGGCGCGccACGUCCAGCUcGa -5'
28181 5' -63.4 NC_005887.1 + 21381 0.66 0.245302
Target:  5'- gUGGCGCCaaGCGCcagcGCGGGaacagCGAGCa -3'
miRNA:   3'- -ACCGCGG--CGCGcca-CGUCCa----GCUCGa -5'
28181 5' -63.4 NC_005887.1 + 1234 0.66 0.243454
Target:  5'- gGGCGCUGCGCGGcGCucagcacgcgaaaacGUCGcauAGCUa -3'
miRNA:   3'- aCCGCGGCGCGCCaCGuc-------------CAGC---UCGA- -5'
28181 5' -63.4 NC_005887.1 + 1095 0.66 0.241617
Target:  5'- cGGCGCCauuGCcgacgccgagcagguGCGuGUGCuuGUCGAGCUc -3'
miRNA:   3'- aCCGCGG---CG---------------CGC-CACGucCAGCUCGA- -5'
28181 5' -63.4 NC_005887.1 + 16769 0.66 0.239186
Target:  5'- gGGCGCgauCGaCGCGaUGaAGGUCGGGCa -3'
miRNA:   3'- aCCGCG---GC-GCGCcACgUCCAGCUCGa -5'
28181 5' -63.4 NC_005887.1 + 24125 0.66 0.239186
Target:  5'- cGcGUGUCGUGCGGUGUgaAGcGcCGGGCUu -3'
miRNA:   3'- aC-CGCGGCGCGCCACG--UC-CaGCUCGA- -5'
28181 5' -63.4 NC_005887.1 + 26420 0.67 0.233197
Target:  5'- cUGGCgGCCGCGCGGgaacgcgcgcUGCAGccgcgCGAGa- -3'
miRNA:   3'- -ACCG-CGGCGCGCC----------ACGUCca---GCUCga -5'
28181 5' -63.4 NC_005887.1 + 27472 0.67 0.232605
Target:  5'- cUGGCgcauucuGCCGCGCGGUGCGcgcuGUUGcuGCg -3'
miRNA:   3'- -ACCG-------CGGCGCGCCACGUc---CAGCu-CGa -5'
28181 5' -63.4 NC_005887.1 + 1391 0.67 0.227334
Target:  5'- aGGC-CCGCGCcgaaGC-GGUCGAGCa -3'
miRNA:   3'- aCCGcGGCGCGcca-CGuCCAGCUCGa -5'
28181 5' -63.4 NC_005887.1 + 11553 0.67 0.215984
Target:  5'- cGGCGCgcagCGCGCGGcggucGCGGaaUCGGGCUu -3'
miRNA:   3'- aCCGCG----GCGCGCCa----CGUCc-AGCUCGA- -5'
28181 5' -63.4 NC_005887.1 + 9891 0.67 0.215984
Target:  5'- aGGauCCaGC-CGGUGCAGGUCG-GCg -3'
miRNA:   3'- aCCgcGG-CGcGCCACGUCCAGCuCGa -5'
28181 5' -63.4 NC_005887.1 + 25136 0.67 0.210493
Target:  5'- -aGCGCCGCaGC--UGCAGGucgUCGAGCa -3'
miRNA:   3'- acCGCGGCG-CGccACGUCC---AGCUCGa -5'
28181 5' -63.4 NC_005887.1 + 1671 0.67 0.210493
Target:  5'- cGuGCGCgCGCGCcaGGUGCAGGaUGGuGCg -3'
miRNA:   3'- aC-CGCG-GCGCG--CCACGUCCaGCU-CGa -5'
28181 5' -63.4 NC_005887.1 + 40864 0.67 0.210493
Target:  5'- -cGCGCCGCGCGaGcGCcgcacgccgucGGcGUCGGGCUc -3'
miRNA:   3'- acCGCGGCGCGC-CaCG-----------UC-CAGCUCGA- -5'
28181 5' -63.4 NC_005887.1 + 40552 0.67 0.210493
Target:  5'- cGGCgGCaCGUccuucggguaGCGGccgacgcGCAGGUCGAGCa -3'
miRNA:   3'- aCCG-CG-GCG----------CGCCa------CGUCCAGCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.