miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2819 3' -52.9 NC_001491.2 + 144679 0.71 0.825316
Target:  5'- cCUCuuc-GGCCGCGCugGCuGCGCGg -3'
miRNA:   3'- aGAGcuuuUUGGCGCGugUG-CGCGCg -5'
2819 3' -52.9 NC_001491.2 + 141466 0.71 0.825316
Target:  5'- cCUCGAuccacgugaccgAGGACuCGCGCACccuGCGCaggGCGCu -3'
miRNA:   3'- aGAGCU------------UUUUG-GCGCGUG---UGCG---CGCG- -5'
2819 3' -52.9 NC_001491.2 + 116403 0.71 0.833829
Target:  5'- gCUcCGAcGAGCUGCGCcuCGCGgUGCGCg -3'
miRNA:   3'- aGA-GCUuUUUGGCGCGu-GUGC-GCGCG- -5'
2819 3' -52.9 NC_001491.2 + 5802 0.71 0.842152
Target:  5'- uUCUCGGcgu-CCcCGCA-GCGCGCGCa -3'
miRNA:   3'- -AGAGCUuuuuGGcGCGUgUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 29394 0.71 0.850279
Target:  5'- --cCGGGAGugCGCGCGCcUGCagGCGCu -3'
miRNA:   3'- agaGCUUUUugGCGCGUGuGCG--CGCG- -5'
2819 3' -52.9 NC_001491.2 + 118653 0.7 0.858203
Target:  5'- uUCUCGAccccGAAGCCGgaGCuaGCACGCcauggccagccaGCGCa -3'
miRNA:   3'- -AGAGCU----UUUUGGCg-CG--UGUGCG------------CGCG- -5'
2819 3' -52.9 NC_001491.2 + 67487 0.7 0.865915
Target:  5'- --aCGAGGugcuuGCCGCGCACgACGC-CGUa -3'
miRNA:   3'- agaGCUUUu----UGGCGCGUG-UGCGcGCG- -5'
2819 3' -52.9 NC_001491.2 + 82634 0.7 0.865915
Target:  5'- --gUGAGAGccugcACCGCGCGCGCuaccagcCGCGCg -3'
miRNA:   3'- agaGCUUUU-----UGGCGCGUGUGc------GCGCG- -5'
2819 3' -52.9 NC_001491.2 + 37037 0.7 0.865915
Target:  5'- gUCUCGAAAAcaCGCaGCAUA-GCGCGUu -3'
miRNA:   3'- -AGAGCUUUUugGCG-CGUGUgCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 136207 0.7 0.880686
Target:  5'- aUCUgGGAuAACgCGCGU-UACGCGCGUc -3'
miRNA:   3'- -AGAgCUUuUUG-GCGCGuGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 148377 0.7 0.887732
Target:  5'- --gCGcAGAGuCCGgGUACAgGCGCGCg -3'
miRNA:   3'- agaGCuUUUU-GGCgCGUGUgCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 28615 0.69 0.894546
Target:  5'- gUUUGGAAAcgaCGCaGC-CGCGCGCGCu -3'
miRNA:   3'- aGAGCUUUUug-GCG-CGuGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 139998 0.69 0.894546
Target:  5'- aCUCGGcgGACC-CGCuGCGC-CGCGCc -3'
miRNA:   3'- aGAGCUuuUUGGcGCG-UGUGcGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 123158 0.69 0.901124
Target:  5'- -gUCGcAGAACaUGCgGUACACGCGCGg -3'
miRNA:   3'- agAGCuUUUUG-GCG-CGUGUGCGCGCg -5'
2819 3' -52.9 NC_001491.2 + 60852 0.69 0.907463
Target:  5'- cUUUGAcAGAcgcuCCGCGUACAUGCGCcuGCg -3'
miRNA:   3'- aGAGCUuUUU----GGCGCGUGUGCGCG--CG- -5'
2819 3' -52.9 NC_001491.2 + 68568 0.69 0.907463
Target:  5'- gUUUGu-GAGCCGCGC-CGCGgGCGg -3'
miRNA:   3'- aGAGCuuUUUGGCGCGuGUGCgCGCg -5'
2819 3' -52.9 NC_001491.2 + 54696 0.69 0.913559
Target:  5'- --cCGAggcAGAACuCGUGCGCGCaaugguggacuGCGCGCa -3'
miRNA:   3'- agaGCU---UUUUG-GCGCGUGUG-----------CGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 67608 0.69 0.913559
Target:  5'- gCUCGcGAucAGCCGCaGCAC-CGCGCu- -3'
miRNA:   3'- aGAGCuUU--UUGGCG-CGUGuGCGCGcg -5'
2819 3' -52.9 NC_001491.2 + 140160 0.69 0.913559
Target:  5'- gCUCcgugGggGAcuuuGCCGCGguCGUGCGCGCc -3'
miRNA:   3'- aGAG----CuuUU----UGGCGCguGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 23272 0.69 0.919411
Target:  5'- cUUCGc--AAgCGCGCAacggGCGCGCGCc -3'
miRNA:   3'- aGAGCuuuUUgGCGCGUg---UGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.