miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2819 3' -52.9 NC_001491.2 + 148593 0.72 0.798728
Target:  5'- -aUCGGuuGGCCGCGCgguggcucuGCGCG-GCGCc -3'
miRNA:   3'- agAGCUuuUUGGCGCG---------UGUGCgCGCG- -5'
2819 3' -52.9 NC_001491.2 + 148377 0.7 0.887732
Target:  5'- --gCGcAGAGuCCGgGUACAgGCGCGCg -3'
miRNA:   3'- agaGCuUUUU-GGCgCGUGUgCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 148177 0.69 0.919411
Target:  5'- cCUCGGugGAGACCGCGUccaGCACcaggaGCuuGCGCc -3'
miRNA:   3'- aGAGCU--UUUUGGCGCG---UGUG-----CG--CGCG- -5'
2819 3' -52.9 NC_001491.2 + 147631 0.75 0.649949
Target:  5'- gCUCGggGggacaguaGGCCGCGCAagcCGCGuCGCu -3'
miRNA:   3'- aGAGCuuU--------UUGGCGCGUgu-GCGC-GCG- -5'
2819 3' -52.9 NC_001491.2 + 146844 0.66 0.980866
Target:  5'- gUC-CGGgccaccaccAGAACgGCGCGCAcCGCgagGCGCa -3'
miRNA:   3'- -AGaGCU---------UUUUGgCGCGUGU-GCG---CGCG- -5'
2819 3' -52.9 NC_001491.2 + 146324 0.71 0.823592
Target:  5'- cUCUCGGGuaggccauguCCGCGUAgGCGCGC-Cg -3'
miRNA:   3'- -AGAGCUUuuu-------GGCGCGUgUGCGCGcG- -5'
2819 3' -52.9 NC_001491.2 + 144679 0.71 0.825316
Target:  5'- cCUCuuc-GGCCGCGCugGCuGCGCGg -3'
miRNA:   3'- aGAGcuuuUUGGCGCGugUG-CGCGCg -5'
2819 3' -52.9 NC_001491.2 + 144599 0.66 0.976225
Target:  5'- --gCGAAGucGCUGCGCugGCuggccaugGCGUGCu -3'
miRNA:   3'- agaGCUUUu-UGGCGCGugUG--------CGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 141793 0.68 0.944987
Target:  5'- --aCGGAcAGCCGUGCGgG-GCGUGCg -3'
miRNA:   3'- agaGCUUuUUGGCGCGUgUgCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 141659 0.68 0.949371
Target:  5'- -aUCGAc--GCCGUGCGCGUGCcCGCg -3'
miRNA:   3'- agAGCUuuuUGGCGCGUGUGCGcGCG- -5'
2819 3' -52.9 NC_001491.2 + 141466 0.71 0.825316
Target:  5'- cCUCGAuccacgugaccgAGGACuCGCGCACccuGCGCaggGCGCu -3'
miRNA:   3'- aGAGCU------------UUUUG-GCGCGUG---UGCG---CGCG- -5'
2819 3' -52.9 NC_001491.2 + 140367 0.85 0.209511
Target:  5'- cUCgCGGAGGGCCGCGCGCAaucaGUGCGCc -3'
miRNA:   3'- -AGaGCUUUUUGGCGCGUGUg---CGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 140194 0.68 0.940362
Target:  5'- --aCGGAc-ACCGCgGCGCACGCGgucuCGCu -3'
miRNA:   3'- agaGCUUuuUGGCG-CGUGUGCGC----GCG- -5'
2819 3' -52.9 NC_001491.2 + 140160 0.69 0.913559
Target:  5'- gCUCcgugGggGAcuuuGCCGCGguCGUGCGCGCc -3'
miRNA:   3'- aGAG----CuuUU----UGGCGCguGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 139998 0.69 0.894546
Target:  5'- aCUCGGcgGACC-CGCuGCGC-CGCGCc -3'
miRNA:   3'- aGAGCUuuUUGGcGCG-UGUGcGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 139860 0.68 0.949371
Target:  5'- gCUCGcgc--CCGCagauguacgaGCGCGCGUGUGCg -3'
miRNA:   3'- aGAGCuuuuuGGCG----------CGUGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 139801 0.68 0.935493
Target:  5'- -aUCGggGAgacGCCGCcgGCGgACGCagaGCGCu -3'
miRNA:   3'- agAGCuuUU---UGGCG--CGUgUGCG---CGCG- -5'
2819 3' -52.9 NC_001491.2 + 138775 0.68 0.944987
Target:  5'- cUUCGggGuuuuCUGCagACACGUGCGCg -3'
miRNA:   3'- aGAGCuuUuu--GGCGcgUGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 136207 0.7 0.880686
Target:  5'- aUCUgGGAuAACgCGCGU-UACGCGCGUc -3'
miRNA:   3'- -AGAgCUUuUUG-GCGCGuGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 135072 0.8 0.362394
Target:  5'- gCUCGAAAGauucGCCaucaGCGUACACGCGCGa -3'
miRNA:   3'- aGAGCUUUU----UGG----CGCGUGUGCGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.