miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2821 3' -59.6 NC_001491.2 + 40100 0.66 0.75646
Target:  5'- -aCGCUGCGacUGCCCGCUGCgCAgUCGc -3'
miRNA:   3'- cgGCGAUGU--GCGGGUGGCGgGU-AGUa -5'
2821 3' -59.6 NC_001491.2 + 95450 0.66 0.75646
Target:  5'- -aCGUUGCGC-CCCGCCacgagucuGUCCAUCAg -3'
miRNA:   3'- cgGCGAUGUGcGGGUGG--------CGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 147573 0.66 0.75646
Target:  5'- uCCGCggggaACGCGCCUgaauCCGCCCcgacgGUCGg -3'
miRNA:   3'- cGGCGa----UGUGCGGGu---GGCGGG-----UAGUa -5'
2821 3' -59.6 NC_001491.2 + 121431 0.66 0.75646
Target:  5'- uCCGUcGCACGCCCcgcacgGCUGUCCGUgGg -3'
miRNA:   3'- cGGCGaUGUGCGGG------UGGCGGGUAgUa -5'
2821 3' -59.6 NC_001491.2 + 116636 0.66 0.746981
Target:  5'- cGCCuGCgUGCugGCCUGCCaGgCCGUCu- -3'
miRNA:   3'- -CGG-CG-AUGugCGGGUGG-CgGGUAGua -5'
2821 3' -59.6 NC_001491.2 + 101844 0.66 0.717996
Target:  5'- aGCgGCUcaaGCGCGCCCccggcgcgACCGUCCAc--- -3'
miRNA:   3'- -CGgCGA---UGUGCGGG--------UGGCGGGUagua -5'
2821 3' -59.6 NC_001491.2 + 141535 0.66 0.717996
Target:  5'- cGCCGUg--GCGCCCcgaugugaACCGCCUcgCGg -3'
miRNA:   3'- -CGGCGaugUGCGGG--------UGGCGGGuaGUa -5'
2821 3' -59.6 NC_001491.2 + 67984 0.66 0.717017
Target:  5'- aGCCGCUGCG-GCCUuuuugguGCgCGCCCAa--- -3'
miRNA:   3'- -CGGCGAUGUgCGGG-------UG-GCGGGUagua -5'
2821 3' -59.6 NC_001491.2 + 114469 0.67 0.698301
Target:  5'- cGCCGagGCcgaGCCCcugguGCUGCCCAUCAc -3'
miRNA:   3'- -CGGCgaUGug-CGGG-----UGGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 120780 0.67 0.678391
Target:  5'- uCCGUUcCACGCCCccACCcCCCGUCu- -3'
miRNA:   3'- cGGCGAuGUGCGGG--UGGcGGGUAGua -5'
2821 3' -59.6 NC_001491.2 + 7129 0.67 0.677391
Target:  5'- uGCCGCguuuaccaucuggUAUACcCUCACCGCCCAgcugCAc -3'
miRNA:   3'- -CGGCG-------------AUGUGcGGGUGGCGGGUa---GUa -5'
2821 3' -59.6 NC_001491.2 + 125510 0.67 0.668376
Target:  5'- gGCCGCcGC-CGCgaCGCCGCCCcgCc- -3'
miRNA:   3'- -CGGCGaUGuGCGg-GUGGCGGGuaGua -5'
2821 3' -59.6 NC_001491.2 + 4158 0.67 0.658333
Target:  5'- uGCUGCgaucugcaaACGCGCCUACaCGCCUuuuUCAUc -3'
miRNA:   3'- -CGGCGa--------UGUGCGGGUG-GCGGGu--AGUA- -5'
2821 3' -59.6 NC_001491.2 + 141330 0.67 0.658333
Target:  5'- cCCGCUGCGCGCCaCGCUGCg------ -3'
miRNA:   3'- cGGCGAUGUGCGG-GUGGCGgguagua -5'
2821 3' -59.6 NC_001491.2 + 74225 0.67 0.658333
Target:  5'- cGCCGCaGCAgcccucgcuccCGCCgCGCCGCCgCcgCAg -3'
miRNA:   3'- -CGGCGaUGU-----------GCGG-GUGGCGG-GuaGUa -5'
2821 3' -59.6 NC_001491.2 + 74161 0.67 0.658333
Target:  5'- cGCCGCaGCAgcccucgcuccCGCCgCGCCGCCgCcgCAg -3'
miRNA:   3'- -CGGCGaUGU-----------GCGG-GUGGCGG-GuaGUa -5'
2821 3' -59.6 NC_001491.2 + 74097 0.67 0.658333
Target:  5'- cGCCGCaGCAgcccucgcuccCGCCgCGCCGCCgCcgCAg -3'
miRNA:   3'- -CGGCGaUGU-----------GCGG-GUGGCGG-GuaGUa -5'
2821 3' -59.6 NC_001491.2 + 74033 0.67 0.658333
Target:  5'- cGCCGCaGCAgcccucgcuccCGCCgCGCCGCCgCcgCAg -3'
miRNA:   3'- -CGGCGaUGU-----------GCGG-GUGGCGG-GuaGUa -5'
2821 3' -59.6 NC_001491.2 + 29549 0.67 0.648269
Target:  5'- uGUgGCgUACAUGCCUACCGUgUCAUCGUc -3'
miRNA:   3'- -CGgCG-AUGUGCGGGUGGCG-GGUAGUA- -5'
2821 3' -59.6 NC_001491.2 + 81312 0.68 0.638193
Target:  5'- gGCCGUggGCaACGCCCGCCggcgugGCCggCAUCAg -3'
miRNA:   3'- -CGGCGa-UG-UGCGGGUGG------CGG--GUAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.