Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28219 | 3' | -48.9 | NC_005891.1 | + | 10427 | 0.67 | 0.888611 |
Target: 5'- uGCuGCGGCuacagACAAUgugGCcgucguAGCGCCUGCg -3' miRNA: 3'- -UGuCGUCG-----UGUUGa--UGu-----UUGUGGACG- -5' |
|||||||
28219 | 3' | -48.9 | NC_005891.1 | + | 9816 | 0.7 | 0.717044 |
Target: 5'- --cGCGGCACuggacgGGCUACAAGCAUCUa- -3' miRNA: 3'- uguCGUCGUG------UUGAUGUUUGUGGAcg -5' |
|||||||
28219 | 3' | -48.9 | NC_005891.1 | + | 8782 | 0.72 | 0.610173 |
Target: 5'- gUAGuCGGCGCucuugcuACUACGAACGCC-GCg -3' miRNA: 3'- uGUC-GUCGUGu------UGAUGUUUGUGGaCG- -5' |
|||||||
28219 | 3' | -48.9 | NC_005891.1 | + | 5525 | 0.68 | 0.824852 |
Target: 5'- aACAGaCGGCACAagcguuGCUucaaaaaACGGGCGcuCCUGCg -3' miRNA: 3'- -UGUC-GUCGUGU------UGA-------UGUUUGU--GGACG- -5' |
|||||||
28219 | 3' | -48.9 | NC_005891.1 | + | 3617 | 0.68 | 0.835622 |
Target: 5'- -aGGCGGUu--ACUACgAAAUGCCUGCc -3' miRNA: 3'- ugUCGUCGuguUGAUG-UUUGUGGACG- -5' |
|||||||
28219 | 3' | -48.9 | NC_005891.1 | + | 1454 | 0.68 | 0.835622 |
Target: 5'- cGCAGCuucGCGuaggUAACUAUAAGCACauaCUGCc -3' miRNA: 3'- -UGUCGu--CGU----GUUGAUGUUUGUG---GACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home