miRNA display CGI


Results 61 - 80 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 42103 0.84 0.667945
Target:  5'- uUAACCCUUUAACAUCUAAacuuGCUGUAUu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUU----CGACAUAu -5'
28250 3' -44.6 NC_005902.1 + 40966 0.84 0.679139
Target:  5'- -cACCCUUUAAUACCUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 167155 0.84 0.679139
Target:  5'- --uCCCUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- auuGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 31415 0.84 0.690286
Target:  5'- -uACCCUUUAAUACCUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 140866 0.83 0.701375
Target:  5'- -uAUUCUUUAACAUCUAAGCUGUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 146423 0.83 0.701376
Target:  5'- uUAAUCCUUUAACACCUAAGCUa---- -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 109913 0.83 0.712394
Target:  5'- uUAACCCUUUAAgACCUAAGCUaUAUGc -3'
miRNA:   3'- -AUUGGGAAAUUgUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 109794 0.83 0.723329
Target:  5'- -cACCCUUUAACACCUAAGUUaUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 23284 0.83 0.73417
Target:  5'- uUAAUCCUUUAAUACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 90003 0.83 0.73417
Target:  5'- -uACCCUUUAACACCUAAGUUaUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 98935 0.83 0.73417
Target:  5'- uUAACCCUUUAACcCCUAAGCUaUAUAa -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 61520 0.82 0.744903
Target:  5'- uUAACCCUUUAAUACUUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 18748 0.82 0.744903
Target:  5'- -uACCCUUUAACACCUAAGUUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 54934 0.82 0.744903
Target:  5'- uUAACCCUUUAAUACUUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 158116 0.82 0.755516
Target:  5'- uUAACCCUUUAAUACUUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 42976 0.82 0.755516
Target:  5'- -uACCCUUUAACAUCUAAGCUaUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 54049 0.82 0.755517
Target:  5'- -uAUCCUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 137750 0.82 0.765998
Target:  5'- -uACCCUUUAACACUUAAGCUaUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 109357 0.82 0.765998
Target:  5'- -uACCCUUUAACACUUAAGCUaUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 146732 0.82 0.765998
Target:  5'- -uAUCCUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.