miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 143641 0.67 0.999976
Target:  5'- -uACCUUUUAACAUCUAAGU--UAUAa -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGacAUAU- -5'
28250 3' -44.6 NC_005902.1 + 182934 0.67 0.999991
Target:  5'- ----aUUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- auuggGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 98813 0.67 0.999991
Target:  5'- -uACCUUUUAACACUUAuGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUuCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 55127 0.67 0.999991
Target:  5'- -uACCCUUUAAauCCUAAGCUauaaacaauuGUGUAu -3'
miRNA:   3'- auUGGGAAAUUguGGAUUCGA----------CAUAU- -5'
28250 3' -44.6 NC_005902.1 + 116878 0.67 0.999991
Target:  5'- uUAACCCUUUAAUuCCUAAGaCUa---- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUC-GAcauau -5'
28250 3' -44.6 NC_005902.1 + 13395 0.67 0.999988
Target:  5'- uUAACCU---AAUACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGaaaUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 102202 0.67 0.999988
Target:  5'- uUAACCCUUUAACuCCUAAGa------ -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUCgacauau -5'
28250 3' -44.6 NC_005902.1 + 127469 0.67 0.999983
Target:  5'- -uACUCUUUAACACaUAAGCUaUAUAg -3'
miRNA:   3'- auUGGGAAAUUGUGgAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 95403 0.67 0.999976
Target:  5'- uUAAUCCUUUAACACCUAAaUUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 23975 0.67 0.999991
Target:  5'- uUAAUCCUUUAACAUCUAAaCUaUAUAa -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 87341 0.67 0.999993
Target:  5'- aUGACaCCUuaagaguuaaaggcUUAAUACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUG-GGA--------------AAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 151173 0.67 0.999994
Target:  5'- aAGCCUUaggaauuaaagggUUAACACCUAAGUUaUAUAu -3'
miRNA:   3'- aUUGGGA-------------AAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 175513 0.66 0.999998
Target:  5'- uUAACCCUUUAACuCUUAAGaUGUu-- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUCgACAuau -5'
28250 3' -44.6 NC_005902.1 + 157070 0.66 0.999998
Target:  5'- aUAGCUUaggugUUAACACCUAAGCUa---- -3'
miRNA:   3'- -AUUGGGa----AAUUGUGGAUUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 73847 0.66 0.999998
Target:  5'- uUAACCUUUUAACACaUAAGCa----- -3'
miRNA:   3'- -AUUGGGAAAUUGUGgAUUCGacauau -5'
28250 3' -44.6 NC_005902.1 + 134638 0.66 0.999997
Target:  5'- uUAACCCUUUAAUuCCUAAuguGUUGUu-- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUU---CGACAuau -5'
28250 3' -44.6 NC_005902.1 + 148615 0.66 0.999997
Target:  5'- uUAACCCUUUAAUACCUAuaUUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUucGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 140918 0.66 0.999996
Target:  5'- uUAAUCa--UAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGgaaAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 84813 0.66 0.999996
Target:  5'- uUAACCCUUUAAC-UCUuAGCUaUAUGu -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAuUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 43915 0.67 0.999994
Target:  5'- -uACUCUUUAACACCUaAAGCa----- -3'
miRNA:   3'- auUGGGAAAUUGUGGA-UUCGacauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.