miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 143802 0.8 0.829087
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAGaGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 167185 0.8 0.829087
Target:  5'- cGUAUAUAGCUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 10428 0.8 0.829087
Target:  5'- uUGUAUACGGCUUAcGUaUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 43887 0.8 0.829087
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGaGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 29494 0.8 0.838051
Target:  5'- -aUAUAUAGCUUAGGUgUUaAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAA-UUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 155244 0.8 0.838051
Target:  5'- cGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 13436 0.8 0.838051
Target:  5'- aGUAUAUAGCUUAaGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 6230 0.8 0.846796
Target:  5'- aGUAUAUAGCUUAGuUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 49473 0.8 0.846797
Target:  5'- aGUAUAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 151227 0.8 0.846797
Target:  5'- aGUAUAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 146943 0.8 0.846797
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 105306 0.8 0.846797
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 43022 0.8 0.846797
Target:  5'- aGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 40095 0.8 0.846797
Target:  5'- aGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 87103 0.8 0.855315
Target:  5'- -uUAUAUAGCUUAGGggUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 134437 0.79 0.879427
Target:  5'- ----cACAGCUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- acauaUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 3477 0.78 0.901233
Target:  5'- uUGUAUAUAGCUUAGGUgUUAaaaucGAGuGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAU-----UUC-CCA- -5'
28250 5' -45.3 NC_005902.1 + 165978 0.78 0.907965
Target:  5'- uUGUAUAUGGCUUAuGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 19913 0.78 0.914423
Target:  5'- aUGUAUAUAGCUUAaGUaUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 131991 0.78 0.914423
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.