miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 43022 0.8 0.846797
Target:  5'- aGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 43830 0.66 0.999996
Target:  5'- --cGUGCaAGcCUUAGGaUUUAAAGGGUu -3'
miRNA:   3'- acaUAUG-UC-GAAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 43887 0.8 0.829087
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGaGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 45121 0.68 0.999901
Target:  5'- cGUAUAUAGCUUAGGUgUUAu----- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUuuccca -5'
28250 5' -45.3 NC_005902.1 + 45173 0.67 0.999958
Target:  5'- aGUAUACAGCUUAGaUgUUAAAGa-- -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCcca -5'
28250 5' -45.3 NC_005902.1 + 48290 0.74 0.98337
Target:  5'- -aUAUAUAGCUUAaGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 48419 0.67 0.999984
Target:  5'- uUGUAUAUA-CUUAGGU---AAAGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgaaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 48608 0.67 0.999984
Target:  5'- aGUGUAUAGCUUAGaUgUUAAAaGGUg -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 48611 0.67 0.999958
Target:  5'- -aUAUAUAGUUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 49473 0.8 0.846797
Target:  5'- aGUAUAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 49995 0.89 0.402823
Target:  5'- aGUAUAUAGCUUAGGagUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 50083 0.66 0.999996
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAc---- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUuccca -5'
28250 5' -45.3 NC_005902.1 + 50229 0.71 0.998672
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGa-- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCcca -5'
28250 5' -45.3 NC_005902.1 + 50495 0.72 0.994535
Target:  5'- gUGUGUAUcuAGUUUAGGUgUUAAAGGa- -3'
miRNA:   3'- -ACAUAUG--UCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 51462 0.75 0.973557
Target:  5'- uUGUAUAUAGCUUAaaUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 52206 0.77 0.947338
Target:  5'- gGUAUAUcaCUUAGGUgUUAAAGGGUg -3'
miRNA:   3'- aCAUAUGucGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 52366 0.81 0.791244
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 54378 0.87 0.501513
Target:  5'- -aUGUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 55098 0.69 0.99978
Target:  5'- aGUAUA-AGCuUUAGGaUUUAAAGGGUa -3'
miRNA:   3'- aCAUAUgUCG-AAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 55157 0.77 0.947338
Target:  5'- gUGUAUAUAGCUUGaGagUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUcCagAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.