Results 41 - 60 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 134191 | 0.81 | 0.810543 |
Target: 5'- uUGUAUAUAGCUUAGaUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 127425 | 0.86 | 0.554698 |
Target: 5'- -aUAUACAGCUUAaGUCUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUcCAGAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 42267 | 0.96 | 0.194058 |
Target: 5'- aGUAUAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 97476 | 0.81 | 0.810543 |
Target: 5'- uUGUAUAUAaCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 20153 | 0.96 | 0.188896 |
Target: 5'- cGUAUAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 96037 | 0.74 | 0.985323 |
Target: 5'- -aUAUAUAaCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- acAUAUGUcGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 80777 | 0.95 | 0.204752 |
Target: 5'- gGUAUAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 48290 | 0.74 | 0.98337 |
Target: 5'- -aUAUAUAGCUUAaGUgUUAAAGGGUa -3' miRNA: 3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 144190 | 0.75 | 0.967318 |
Target: 5'- uUGUAUAUAGUUUAGaUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 71498 | 0.77 | 0.942544 |
Target: 5'- -uUAUAUAGCcUAGGUgUUAAAGGGg -3' miRNA: 3'- acAUAUGUCGaAUCCAgAAUUUCCCa -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 165978 | 0.78 | 0.907965 |
Target: 5'- uUGUAUAUGGCUUAuGUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 6230 | 0.8 | 0.846796 |
Target: 5'- aGUAUAUAGCUUAGuUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 10428 | 0.8 | 0.829087 |
Target: 5'- uUGUAUACGGCUUAcGUaUUAAAGGGUa -3' miRNA: 3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 23506 | 0.81 | 0.800983 |
Target: 5'- uUGUAUAUAGCUUAaGUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 162433 | 0.81 | 0.791244 |
Target: 5'- gUGUGUAUAGCUUAGGUgUUAAAGaGUa -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 167291 | 0.82 | 0.750732 |
Target: 5'- uUGUAUAUAaCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 27812 | 0.85 | 0.598396 |
Target: 5'- uUGUAUAUAGCUUAGGcaUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCagAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 54378 | 0.87 | 0.501513 |
Target: 5'- -aUGUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 13226 | 0.88 | 0.440863 |
Target: 5'- -aUAUAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 1180 | 0.91 | 0.325252 |
Target: 5'- -aUAUACAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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