miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 1197 0.87 0.803521
Target:  5'- uAAAGGGUUAACACcUAAGUUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 28974 0.73 0.999907
Target:  5'- -uAGGuGUUAACACcUAAGCUAUAc-- -3'
miRNA:   3'- uuUCC-CAAUUGUGaAUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 117047 0.69 1
Target:  5'- -----uUUAAUACUUAAGCUAUAUAUu -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 134314 0.7 1
Target:  5'- uAAGGGGUauuuacccuuUAACAUUUAAGC-AUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGaUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 169446 0.74 0.999836
Target:  5'- -----uUUAACACUUAAGCUGUAUAUu -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 6248 0.82 0.953348
Target:  5'- uAAAGGGUUAACACcgAAGCcAUAUAUa -3'
miRNA:   3'- -UUUCCCAAUUGUGaaUUCGaUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 27877 0.88 0.750667
Target:  5'- uAAAGGGUUAAUGCcUAAGCUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 184577 0.88 0.728486
Target:  5'- uAAAGGGUacuuaugcuuUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 45066 0.78 0.991558
Target:  5'- uAAAGGGUguuuaccuuuUAACACcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 21171 0.75 0.999258
Target:  5'- -----uUUAACACUUAAGCUAUAUAUg -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 125544 0.76 0.998845
Target:  5'- ----aGUUAACAUUUAAGCUAUAUAUa -3'
miRNA:   3'- uuuccCAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 58213 0.79 0.986989
Target:  5'- uAAAGGGUaaauacucuuUAACACaUAAGCUAUAUAg -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 51418 0.85 0.885096
Target:  5'- uAAAGGGUUAAUAUcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 86020 0.72 0.999981
Target:  5'- uAAAGGaUUAACACcUAAGCUAUAUu- -3'
miRNA:   3'- -UUUCCcAAUUGUGaAUUCGAUAUAua -5'
28251 3' -40.9 NC_005902.1 + 37260 0.73 0.999963
Target:  5'- -----cUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 75995 0.74 0.999836
Target:  5'- uAAAGGGUUAACAUcUAAGCcAUAUu- -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGaUAUAua -5'
28251 3' -40.9 NC_005902.1 + 168413 0.7 0.999999
Target:  5'- -uAGGGUUuaAAgGgUUAAGCUAUAUAUu -3'
miRNA:   3'- uuUCCCAA--UUgUgAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 50203 0.66 1
Target:  5'- ---aGGUauaacccuuUAACACcUAAGCUAUAUAUa -3'
miRNA:   3'- uuucCCA---------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 36945 0.69 1
Target:  5'- cAGGGGUagaguaucucauUAAUACUuuaccUAAGCUAUAUAc -3'
miRNA:   3'- uUUCCCA------------AUUGUGA-----AUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 61527 0.71 0.999998
Target:  5'- -----uUUAAUACUUAAGCUAUAUAUg -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.