miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 47187 0.73 0.999949
Target:  5'- -----uUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 48099 0.71 0.999997
Target:  5'- uAAAGGuGcuuacccuUUAACAUUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCC-C--------AAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 48233 0.77 0.997111
Target:  5'- uAAGGGUuacuUAucuuuuaauccuuuaACACUUAAGCUAUAUAUa -3'
miRNA:   3'- uUUCCCA----AU---------------UGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 48563 0.66 1
Target:  5'- uAAAGGGUUAAUACcUAAaCUAUAc-- -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUcGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 49648 0.7 0.999999
Target:  5'- uAAAGGGUUAAUACcUAAGUuuacuauguuuauuUGUAUGUa -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCG--------------AUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 50203 0.66 1
Target:  5'- ---aGGUauaacccuuUAACACcUAAGCUAUAUAUa -3'
miRNA:   3'- uuucCCA---------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 51418 0.85 0.885096
Target:  5'- uAAAGGGUUAAUAUcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 51677 0.73 0.999949
Target:  5'- -----uUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 54337 0.79 0.988685
Target:  5'- uAAAGGaUUAACACcUAAGCUAUAUAUa -3'
miRNA:   3'- -UUUCCcAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 54929 0.71 0.999998
Target:  5'- ---aGGUauuaacccuuUAAUACUUAAGCUAUAUAUg -3'
miRNA:   3'- uuucCCA----------AUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 58213 0.79 0.986989
Target:  5'- uAAAGGGUaaauacucuuUAACACaUAAGCUAUAUAg -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 58382 0.66 1
Target:  5'- uAAAGGGUUGAUACcUAAaCUAUAc-- -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUcGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 58587 0.69 1
Target:  5'- uAAAGGGUUAAacauuaaauuaucUuuuuaacccuuuaagACUUAAGCUGUAUAUa -3'
miRNA:   3'- -UUUCCCAAUU-------------G---------------UGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 61527 0.71 0.999998
Target:  5'- -----uUUAAUACUUAAGCUAUAUAUg -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 65688 0.82 0.948672
Target:  5'- aAAGGGGUUAAUACUUAAaCUAUAUAa -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUUcGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 68937 0.73 0.999949
Target:  5'- -----uUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 68957 0.83 0.926927
Target:  5'- ---aGGUUAAUACUUAAGCUAUAUAa -3'
miRNA:   3'- uuucCCAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 71201 0.73 0.999949
Target:  5'- -----uUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 71212 0.66 1
Target:  5'- -----uUUAAUGCUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 71319 0.83 0.926927
Target:  5'- uAGGGGUUAACAUcUAAGUUAUAUAUa -3'
miRNA:   3'- uUUCCCAAUUGUGaAUUCGAUAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.