miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 58213 0.79 0.986989
Target:  5'- uAAAGGGUaaauacucuuUAACACaUAAGCUAUAUAg -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 54337 0.79 0.988685
Target:  5'- uAAAGGaUUAACACcUAAGCUAUAUAUa -3'
miRNA:   3'- -UUUCCcAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 45066 0.78 0.991558
Target:  5'- uAAAGGGUguuuaccuuuUAACACcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 165875 0.78 0.991558
Target:  5'- uAAAGGGUgaauacccuuUAACACcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 85604 0.77 0.995569
Target:  5'- cAGAGGGUauucauccuuUAACcCUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGuGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 170691 0.77 0.996891
Target:  5'- -uAGGGUuuaacucuuUAACACcUAAGCUAUAUAUg -3'
miRNA:   3'- uuUCCCA---------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 5175 0.77 0.996891
Target:  5'- uAAAGGGUUAAUAUUUAAGCUuUAa-- -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUUCGAuAUaua -5'
28251 3' -40.9 NC_005902.1 + 15414 0.77 0.996891
Target:  5'- -uAGGGUuuaacucuuUAACACcUAAGCUAUAUAUa -3'
miRNA:   3'- uuUCCCA---------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 48233 0.77 0.997111
Target:  5'- uAAGGGUuacuUAucuuuuaauccuuuaACACUUAAGCUAUAUAUa -3'
miRNA:   3'- uUUCCCA----AU---------------UGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 17291 0.77 0.997418
Target:  5'- gGAGGGGgaAACAUUUGAGUUGUGUc- -3'
miRNA:   3'- -UUUCCCaaUUGUGAAUUCGAUAUAua -5'
28251 3' -40.9 NC_005902.1 + 173886 0.77 0.997418
Target:  5'- -uAGaGUUAAUACUUAAGCUAUAUAc -3'
miRNA:   3'- uuUCcCAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 109346 0.77 0.997868
Target:  5'- cAGAGGauauuuacccuUUAACACUUAAGCUAUAUAUa -3'
miRNA:   3'- -UUUCCc----------AAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 88292 0.76 0.998845
Target:  5'- uAAAGGaUUAACACcUAAGCUAUAUGc -3'
miRNA:   3'- -UUUCCcAAUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 125544 0.76 0.998845
Target:  5'- ----aGUUAACAUUUAAGCUAUAUAUa -3'
miRNA:   3'- uuuccCAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 32972 0.76 0.998845
Target:  5'- uAAGGGGUUAACACcUAAaCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUcGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 40069 0.75 0.999258
Target:  5'- -----uUUAACACUUAAGCUAUAUAUg -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 21171 0.75 0.999258
Target:  5'- -----uUUAACACUUAAGCUAUAUAUg -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 45317 0.75 0.999258
Target:  5'- --uGGGUUAAaAUUUAAGCUAUAUAc -3'
miRNA:   3'- uuuCCCAAUUgUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 3375 0.75 0.999258
Target:  5'- uAAAGGGUU-ACACcUAAGCUAUAc-- -3'
miRNA:   3'- -UUUCCCAAuUGUGaAUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 77086 0.75 0.999411
Target:  5'- -uAGGGUagaauaaugcUAACACUUAAGCuUAUAUAc -3'
miRNA:   3'- uuUCCCA----------AUUGUGAAUUCG-AUAUAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.