miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 10120 0.66 1
Target:  5'- uAAAGGGUUAAUAUcUAAauuuGCUAUAUu- -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUU----CGAUAUAua -5'
28251 3' -40.9 NC_005902.1 + 71660 0.69 1
Target:  5'- -----uUUAACACUUAAGUUAUAUAUg -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 149748 0.69 1
Target:  5'- uAAAGGGUUAACAUUUuaacucuaAGGCUuuUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGAA--------UUCGAu-AUAUa -5'
28251 3' -40.9 NC_005902.1 + 76775 0.69 1
Target:  5'- uAAAGGauu-ACAUUUAGGCUAUAUAc -3'
miRNA:   3'- -UUUCCcaauUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 140056 0.69 1
Target:  5'- -----uUUAAUACUUAAGCUAUAUAUu -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 58587 0.69 1
Target:  5'- uAAAGGGUUAAacauuaaauuaucUuuuuaacccuuuaagACUUAAGCUGUAUAUa -3'
miRNA:   3'- -UUUCCCAAUU-------------G---------------UGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 39156 0.66 1
Target:  5'- aAGGGGGUguaAAUGCUUGAGUUAa---- -3'
miRNA:   3'- -UUUCCCAa--UUGUGAAUUCGAUauaua -5'
28251 3' -40.9 NC_005902.1 + 172715 0.7 0.999999
Target:  5'- uAGGGGUUAACuuuauaauACcUAAGUUAUAUAUg -3'
miRNA:   3'- uUUCCCAAUUG--------UGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 168413 0.7 0.999999
Target:  5'- -uAGGGUUuaAAgGgUUAAGCUAUAUAUu -3'
miRNA:   3'- uuUCCCAA--UUgUgAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 49648 0.7 0.999999
Target:  5'- uAAAGGGUUAAUACcUAAGUuuacuauguuuauuUGUAUGUa -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCG--------------AUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 154902 0.71 0.999998
Target:  5'- uAAAGGGUauucaucuuuUAACAUccAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaaUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 61527 0.71 0.999998
Target:  5'- -----uUUAAUACUUAAGCUAUAUAUg -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 54929 0.71 0.999998
Target:  5'- ---aGGUauuaacccuuUAAUACUUAAGCUAUAUAUg -3'
miRNA:   3'- uuucCCA----------AUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 48099 0.71 0.999997
Target:  5'- uAAAGGuGcuuacccuUUAACAUUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCC-C--------AAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 84930 0.71 0.999997
Target:  5'- uAAAGGGUUAAUAUcUAAaCUAUAUAUa -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUcGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 174974 0.71 0.999996
Target:  5'- ------cUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccaAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 145325 0.72 0.99999
Target:  5'- aAAAGGGUauuCACUcuuuaucUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAauuGUGA-------AUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 91296 0.72 0.999987
Target:  5'- aAAGGGGUaaauaccuuuUAACACUUAAaCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUcGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 86020 0.72 0.999981
Target:  5'- uAAAGGaUUAACACcUAAGCUAUAUu- -3'
miRNA:   3'- -UUUCCcAAUUGUGaAUUCGAUAUAua -5'
28251 3' -40.9 NC_005902.1 + 100100 0.72 0.999981
Target:  5'- uAAAGGaUUAACACcUAAGCUAUAUu- -3'
miRNA:   3'- -UUUCCcAAUUGUGaAUUCGAUAUAua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.