miRNA display CGI


Results 61 - 80 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 86020 0.72 0.999981
Target:  5'- uAAAGGaUUAACACcUAAGCUAUAUu- -3'
miRNA:   3'- -UUUCCcAAUUGUGaAUUCGAUAUAua -5'
28251 3' -40.9 NC_005902.1 + 121611 0.72 0.999973
Target:  5'- uGAAGGGUUAAUAUUUAaauuauauacAGCUAaGUAUa -3'
miRNA:   3'- -UUUCCCAAUUGUGAAU----------UCGAUaUAUA- -5'
28251 3' -40.9 NC_005902.1 + 139691 0.73 0.999963
Target:  5'- uAAAGaGUUAAUACcUAGGCUAUAUAUa -3'
miRNA:   3'- -UUUCcCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 37260 0.73 0.999963
Target:  5'- -----cUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 135801 0.73 0.999963
Target:  5'- cAGAGGaGUuagcucuuUAACACcUAAGCUAUAUAUa -3'
miRNA:   3'- -UUUCC-CA--------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 51677 0.73 0.999949
Target:  5'- -----uUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 71201 0.73 0.999949
Target:  5'- -----uUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 68937 0.73 0.999949
Target:  5'- -----uUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 86446 0.73 0.999949
Target:  5'- -----uUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 162538 0.73 0.999949
Target:  5'- -----uUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 100657 0.73 0.999949
Target:  5'- uAAAGGGUauuuacccuuUAAUAUcUAAGCUAUAUAUg -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 172609 0.73 0.999949
Target:  5'- -----uUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 47187 0.73 0.999949
Target:  5'- -----uUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 28974 0.73 0.999907
Target:  5'- -uAGGuGUUAACACcUAAGCUAUAc-- -3'
miRNA:   3'- uuUCC-CAAUUGUGaAUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 113772 0.73 0.999907
Target:  5'- uAAAGGGUaaauacccuuUAACAacUAAGCUAUAUAUa -3'
miRNA:   3'- -UUUCCCA----------AUUGUgaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 157076 0.73 0.999907
Target:  5'- -uAGGuGUUAACACcUAAGCUAUAc-- -3'
miRNA:   3'- uuUCC-CAAUUGUGaAUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 118635 0.73 0.999901
Target:  5'- uAAAGGauauuuaaccuuUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCc-----------AAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 118280 0.73 0.999901
Target:  5'- uAAAGGauauuuaaccuuUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCc-----------AAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 171296 0.74 0.999876
Target:  5'- -uGGGGUUAAagGgUUAAGCUAUAUAa -3'
miRNA:   3'- uuUCCCAAUUg-UgAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 110035 0.74 0.999876
Target:  5'- uAAAGGGUU-ACAacUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAuUGUgaAUUCGAUAUAUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.