miRNA display CGI


Results 21 - 40 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 23834 0.7 1
Target:  5'- -----uUUAACAUUUAAGCUAUAUAUa -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 27877 0.88 0.750667
Target:  5'- uAAAGGGUUAAUGCcUAAGCUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 28141 0.79 0.986989
Target:  5'- uAAAGGGUauuuaucuuuUAACACcUAAGCUAUAUAa -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 28831 0.89 0.705875
Target:  5'- uAAAGGGUUAAUACcUAAGCUAUAUAUu -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 28974 0.73 0.999907
Target:  5'- -uAGGuGUUAACACcUAAGCUAUAc-- -3'
miRNA:   3'- uuUCC-CAAUUGUGaAUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 29597 0.68 1
Target:  5'- uAAAGGauauuuacccuUUAACAUUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCc----------AAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 31404 0.74 0.999836
Target:  5'- uAAAGGGUauuuacccuuUAAUACcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 32972 0.76 0.998845
Target:  5'- uAAGGGGUUAACACcUAAaCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUcGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 36790 0.68 1
Target:  5'- uAAGGauuaaccuuUUAACACUUAAGCUAUAc-- -3'
miRNA:   3'- uUUCCc--------AAUUGUGAAUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 36945 0.69 1
Target:  5'- cAGGGGUagaguaucucauUAAUACUuuaccUAAGCUAUAUAc -3'
miRNA:   3'- uUUCCCA------------AUUGUGA-----AUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 37260 0.73 0.999963
Target:  5'- -----cUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 37756 0.66 1
Target:  5'- uAAAGGGUauuuaucuuuUAACACcUAAGCUugcuaugcuuauuuGUAUAUa -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGA--------------UAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 39156 0.66 1
Target:  5'- aAGGGGGUguaAAUGCUUGAGUUAa---- -3'
miRNA:   3'- -UUUCCCAa--UUGUGAAUUCGAUauaua -5'
28251 3' -40.9 NC_005902.1 + 40069 0.75 0.999258
Target:  5'- -----uUUAACACUUAAGCUAUAUAUg -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 40958 0.67 1
Target:  5'- --uGGGUauucacccuuUAAUACcUAAGCUAUAUAc -3'
miRNA:   3'- uuuCCCA----------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 41026 0.68 1
Target:  5'- -----uUUAAUACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 43848 0.83 0.938414
Target:  5'- uAAAGGGUUAuUAUUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUuGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 45066 0.78 0.991558
Target:  5'- uAAAGGGUguuuaccuuuUAACACcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 45317 0.75 0.999258
Target:  5'- --uGGGUUAAaAUUUAAGCUAUAUAc -3'
miRNA:   3'- uuuCCCAAUUgUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 46923 0.67 1
Target:  5'- uAAAGGauuuaaccuGUUAAUACcUAAGCUAUAUGc -3'
miRNA:   3'- -UUUCC---------CAAUUGUGaAUUCGAUAUAUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.