miRNA display CGI


Results 21 - 40 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 165705 0.67 1
Target:  5'- aAAAGGuauuuaucuaUUAACACcUAAGCUAUAUAUa -3'
miRNA:   3'- -UUUCCc---------AAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 163506 0.68 1
Target:  5'- uAAAGGaUUAACAUcUAAGCUAUAa-- -3'
miRNA:   3'- -UUUCCcAAUUGUGaAUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 162802 0.74 0.999719
Target:  5'- uAAAGGGUUAAUAUcUAAGCUugcAUAUAg -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGA---UAUAUa -5'
28251 3' -40.9 NC_005902.1 + 162756 0.66 1
Target:  5'- -----uUUAACAUUUAAGCUAUAUGc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 162594 0.74 0.999836
Target:  5'- uAAAGGGcUAACACauucAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCaAUUGUGaa--UUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 162538 0.73 0.999949
Target:  5'- -----uUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 162007 0.66 1
Target:  5'- uAAAGGGUauucaucuuuUAAUAUUUAAGC-AUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGaUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 161621 0.69 1
Target:  5'- uGAAGGGUUAGuguuaACUcauaAGGCUGUAUAUu -3'
miRNA:   3'- -UUUCCCAAUUg----UGAa---UUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 160990 0.74 0.999719
Target:  5'- uAAAGGGgUAAUAUcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCaAUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 158123 0.68 1
Target:  5'- -----uUUAAUACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 157076 0.73 0.999907
Target:  5'- -uAGGuGUUAACACcUAAGCUAUAc-- -3'
miRNA:   3'- uuUCC-CAAUUGUGaAUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 156342 0.7 1
Target:  5'- -----uUUAACAUUUAAGCUAUAUAUg -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 154902 0.71 0.999998
Target:  5'- uAAAGGGUauucaucuuuUAACAUccAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaaUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 153776 0.68 1
Target:  5'- uAAAGGGUUAACACUUGGa-------- -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUUcgauauaua -5'
28251 3' -40.9 NC_005902.1 + 151186 0.89 0.694441
Target:  5'- uAAAGGGUUAACACcUAAGUUAUAUAUa -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 149748 0.69 1
Target:  5'- uAAAGGGUUAACAUUUuaacucuaAGGCUuuUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGAA--------UUCGAu-AUAUa -5'
28251 3' -40.9 NC_005902.1 + 148740 0.88 0.728486
Target:  5'- uAAAGGGUauuuauccuuUAACACUUAAGCUAUAUGa -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 145325 0.72 0.99999
Target:  5'- aAAAGGGUauuCACUcuuuaucUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAauuGUGA-------AUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 145091 0.68 1
Target:  5'- uAAAGGGUgAAUACccAAGCUAUAc-- -3'
miRNA:   3'- -UUUCCCAaUUGUGaaUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 143632 0.75 0.999411
Target:  5'- -cAGGGUuuaaaagauUGACACcUAAGCUAUAUAc -3'
miRNA:   3'- uuUCCCA---------AUUGUGaAUUCGAUAUAUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.