miRNA display CGI


Results 1 - 20 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 184852 0.68 1
Target:  5'- -uAGGuGUuaacccuuUAACACcUAAGCUGUAUAUa -3'
miRNA:   3'- uuUCC-CA--------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 184577 0.88 0.728486
Target:  5'- uAAAGGGUacuuaugcuuUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 182926 0.66 1
Target:  5'- --cGGaGUuaauuuUAACACcUAAGCUAUAUAUg -3'
miRNA:   3'- uuuCC-CA------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 182624 0.88 0.772308
Target:  5'- uAAAGGGUUAA-ACUUAAGCUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUgUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 179752 0.88 0.728486
Target:  5'- uAAAGGGUUAAUACUgAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGAaUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 179468 0.8 0.983017
Target:  5'- uAAAGGGUUAACACcUAAGUUAuuUAUAUa -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAU--AUAUA- -5'
28251 3' -40.9 NC_005902.1 + 174974 0.71 0.999996
Target:  5'- ------cUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccaAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 174593 0.69 1
Target:  5'- --cGaGUUAACACcUAAGCUAUAUAc -3'
miRNA:   3'- uuuCcCAAUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 173886 0.77 0.997418
Target:  5'- -uAGaGUUAAUACUUAAGCUAUAUAc -3'
miRNA:   3'- uuUCcCAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 172715 0.7 0.999999
Target:  5'- uAGGGGUUAACuuuauaauACcUAAGUUAUAUAUg -3'
miRNA:   3'- uUUCCCAAUUG--------UGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 172609 0.73 0.999949
Target:  5'- -----uUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 171296 0.74 0.999876
Target:  5'- -uGGGGUUAAagGgUUAAGCUAUAUAa -3'
miRNA:   3'- uuUCCCAAUUg-UgAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 170691 0.77 0.996891
Target:  5'- -uAGGGUuuaacucuuUAACACcUAAGCUAUAUAUg -3'
miRNA:   3'- uuUCCCA---------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 169547 0.92 0.578469
Target:  5'- -cAGGGUUAAUGCUUAAGCUAUAUAc -3'
miRNA:   3'- uuUCCCAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 169446 0.74 0.999836
Target:  5'- -----uUUAACACUUAAGCUGUAUAUu -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 169128 0.68 1
Target:  5'- -----uUUAACAUUUAAGCUAUAUAg -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 168413 0.7 0.999999
Target:  5'- -uAGGGUUuaAAgGgUUAAGCUAUAUAUu -3'
miRNA:   3'- uuUCCCAA--UUgUgAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 166115 0.85 0.877081
Target:  5'- uGAAGGGUaaauacccuuUAAUACUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 165933 0.86 0.823346
Target:  5'- uAAAGGGUaaacaccuuuUAAUACUUAAGCUAUAUAUa -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 165875 0.78 0.991558
Target:  5'- uAAAGGGUgaauacccuuUAACACcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGAUAUAUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.