miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 133618 1.03 0.187653
Target:  5'- uAAAGGGUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 11037 0.99 0.276564
Target:  5'- uAAAGGGUUAACACUUAAGUUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 87120 0.95 0.435829
Target:  5'- uAAAGGGUUAAUAUUUAAGCUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 22612 0.94 0.488585
Target:  5'- uAAAGGGUUAACACcUAAGCUAUAUAUu -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 8691 0.93 0.521638
Target:  5'- uAAAGGGUUAACACUUAuGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUuCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 137894 0.92 0.578469
Target:  5'- uAAAGGGUUAACAUcUAAGCUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 169547 0.92 0.578469
Target:  5'- -cAGGGUUAAUGCUUAAGCUAUAUAc -3'
miRNA:   3'- uuUCCCAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 137739 0.91 0.613234
Target:  5'- uAAAGGGUauuuacccuuUAACACUUAAGCUAUAUAUa -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 90186 0.91 0.624873
Target:  5'- uAGAGGGUUAAUACaUAAGCUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 81279 0.89 0.694441
Target:  5'- uAAAGGGUUAACAUcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 151186 0.89 0.694441
Target:  5'- uAAAGGGUUAACACcUAAGUUAUAUAUa -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 28831 0.89 0.705875
Target:  5'- uAAAGGGUUAAUACcUAAGCUAUAUAUu -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 11394 0.88 0.728486
Target:  5'- uAAAGGGUauucacucuuUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 184577 0.88 0.728486
Target:  5'- uAAAGGGUacuuaugcuuUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 148740 0.88 0.728486
Target:  5'- uAAAGGGUauuuauccuuUAACACUUAAGCUAUAUGa -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 179752 0.88 0.728486
Target:  5'- uAAAGGGUUAAUACUgAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGAaUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 135954 0.88 0.739637
Target:  5'- cAAAGGGUUAAUACcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 27877 0.88 0.750667
Target:  5'- uAAAGGGUUAAUGCcUAAGCUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 23408 0.88 0.761562
Target:  5'- uAAAGGGUUAACACccAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaaUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 182624 0.88 0.772308
Target:  5'- uAAAGGGUUAA-ACUUAAGCUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUgUGAAUUCGAUAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.