miRNA display CGI


Results 1 - 20 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 1197 0.87 0.803521
Target:  5'- uAAAGGGUUAACACcUAAGUUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 3375 0.75 0.999258
Target:  5'- uAAAGGGUU-ACACcUAAGCUAUAc-- -3'
miRNA:   3'- -UUUCCCAAuUGUGaAUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 5175 0.77 0.996891
Target:  5'- uAAAGGGUUAAUAUUUAAGCUuUAa-- -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUUCGAuAUaua -5'
28251 3' -40.9 NC_005902.1 + 6248 0.82 0.953348
Target:  5'- uAAAGGGUUAACACcgAAGCcAUAUAUa -3'
miRNA:   3'- -UUUCCCAAUUGUGaaUUCGaUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 8175 0.66 1
Target:  5'- ------cUAACAUUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccaAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 8285 0.68 1
Target:  5'- uAAAGGGUUAACuCUUGAgguGCUGUu--- -3'
miRNA:   3'- -UUUCCCAAUUGuGAAUU---CGAUAuaua -5'
28251 3' -40.9 NC_005902.1 + 8691 0.93 0.521638
Target:  5'- uAAAGGGUUAACACUUAuGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUuCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 10120 0.66 1
Target:  5'- uAAAGGGUUAAUAUcUAAauuuGCUAUAUu- -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUU----CGAUAUAua -5'
28251 3' -40.9 NC_005902.1 + 11037 0.99 0.276564
Target:  5'- uAAAGGGUUAACACUUAAGUUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 11394 0.88 0.728486
Target:  5'- uAAAGGGUauucacucuuUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 15414 0.77 0.996891
Target:  5'- -uAGGGUuuaacucuuUAACACcUAAGCUAUAUAUa -3'
miRNA:   3'- uuUCCCA---------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 15477 0.8 0.980717
Target:  5'- ---aGGUUAAUGCUUAAGCUAUAUAc -3'
miRNA:   3'- uuucCCAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 15531 0.67 1
Target:  5'- ---aGGUUAAUACUUAAuCUAUAUAUu -3'
miRNA:   3'- uuucCCAAUUGUGAAUUcGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 17291 0.77 0.997418
Target:  5'- gGAGGGGgaAACAUUUGAGUUGUGUc- -3'
miRNA:   3'- -UUUCCCaaUUGUGAAUUCGAUAUAua -5'
28251 3' -40.9 NC_005902.1 + 18847 0.66 1
Target:  5'- -uAGGaGUuaaccuuuUAACACcUAAGCUAUAUAc -3'
miRNA:   3'- uuUCC-CA--------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 21171 0.75 0.999258
Target:  5'- -----uUUAACACUUAAGCUAUAUAUg -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 22612 0.94 0.488585
Target:  5'- uAAAGGGUUAACACcUAAGCUAUAUAUu -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 23306 0.81 0.961818
Target:  5'- uAAAGGGaUAACAUcUAAGCUAUAUGUa -3'
miRNA:   3'- -UUUCCCaAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 23408 0.88 0.761562
Target:  5'- uAAAGGGUUAACACccAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaaUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 23409 0.74 0.999836
Target:  5'- uAAAGGGcUAACACauucAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCaAUUGUGaa--UUCGAUAUAUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.