miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 134582 0.67 1
Target:  5'- -----uUUAACAUUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 127612 0.67 1
Target:  5'- ----uGUUAAUGCUUAAGCUAUGUu- -3'
miRNA:   3'- uuuccCAAUUGUGAAUUCGAUAUAua -5'
28251 3' -40.9 NC_005902.1 + 15531 0.67 1
Target:  5'- ---aGGUUAAUACUUAAuCUAUAUAUu -3'
miRNA:   3'- uuucCCAAUUGUGAAUUcGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 169128 0.68 1
Target:  5'- -----uUUAACAUUUAAGCUAUAUAg -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 76206 0.68 1
Target:  5'- -----uUUAAUACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 41026 0.68 1
Target:  5'- -----uUUAAUACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 8285 0.68 1
Target:  5'- uAAAGGGUUAACuCUUGAgguGCUGUu--- -3'
miRNA:   3'- -UUUCCCAAUUGuGAAUU---CGAUAuaua -5'
28251 3' -40.9 NC_005902.1 + 163506 0.68 1
Target:  5'- uAAAGGaUUAACAUcUAAGCUAUAa-- -3'
miRNA:   3'- -UUUCCcAAUUGUGaAUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 145091 0.68 1
Target:  5'- uAAAGGGUgAAUACccAAGCUAUAc-- -3'
miRNA:   3'- -UUUCCCAaUUGUGaaUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 36790 0.68 1
Target:  5'- uAAGGauuaaccuuUUAACACUUAAGCUAUAc-- -3'
miRNA:   3'- uUUCCc--------AAUUGUGAAUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 153776 0.68 1
Target:  5'- uAAAGGGUUAACACUUGGa-------- -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUUcgauauaua -5'
28251 3' -40.9 NC_005902.1 + 184852 0.68 1
Target:  5'- -uAGGuGUuaacccuuUAACACcUAAGCUGUAUAUa -3'
miRNA:   3'- uuUCC-CA--------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 158123 0.68 1
Target:  5'- -----uUUAAUACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 29597 0.68 1
Target:  5'- uAAAGGauauuuacccuUUAACAUUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCc----------AAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 58587 0.69 1
Target:  5'- uAAAGGGUUAAacauuaaauuaucUuuuuaacccuuuaagACUUAAGCUGUAUAUa -3'
miRNA:   3'- -UUUCCCAAUU-------------G---------------UGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 149748 0.69 1
Target:  5'- uAAAGGGUUAACAUUUuaacucuaAGGCUuuUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGAA--------UUCGAu-AUAUa -5'
28251 3' -40.9 NC_005902.1 + 71660 0.69 1
Target:  5'- -----uUUAACACUUAAGUUAUAUAUg -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 76775 0.69 1
Target:  5'- uAAAGGauu-ACAUUUAGGCUAUAUAc -3'
miRNA:   3'- -UUUCCcaauUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 117047 0.69 1
Target:  5'- -----uUUAAUACUUAAGCUAUAUAUu -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 161621 0.69 1
Target:  5'- uGAAGGGUUAGuguuaACUcauaAGGCUGUAUAUu -3'
miRNA:   3'- -UUUCCCAAUUg----UGAa---UUCGAUAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.