miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 5' -45.7 NC_005902.1 + 145071 0.66 0.999991
Target:  5'- aGUGUaUAUAGCUUAGGUauuaaaggGUGaauACCCa- -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCA--------CAU---UGGGaa -5'
28251 5' -45.7 NC_005902.1 + 95441 0.66 0.999991
Target:  5'- -------cAGCUUAGGUGUuuuACCCc- -3'
miRNA:   3'- cauacauaUCGAAUCCACAu--UGGGaa -5'
28251 5' -45.7 NC_005902.1 + 23322 0.66 0.999988
Target:  5'- aUAUGU--AGCUUAGGUauaagGUAaauACCCUUu -3'
miRNA:   3'- cAUACAuaUCGAAUCCA-----CAU---UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 154952 0.66 0.999988
Target:  5'- --uUGUucAUAGCUUGGGUGUuaaaaggugAACaCCUa -3'
miRNA:   3'- cauACA--UAUCGAAUCCACA---------UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 50227 0.66 0.999988
Target:  5'- cUAUaUAUAGCUUAGGUGUuaaagagcuAACuCCUc -3'
miRNA:   3'- cAUAcAUAUCGAAUCCACA---------UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 40703 0.66 0.999987
Target:  5'- aGUGUGUAuaUAGCUUAGauaaagaGUGaauACCCUUu -3'
miRNA:   3'- -CAUACAU--AUCGAAUC-------CACau-UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 169577 0.66 0.999987
Target:  5'- -aGUGUAUAGUUUAGGUGUuaaaagguaaauACUUUUu -3'
miRNA:   3'- caUACAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 34852 0.66 0.999983
Target:  5'- cUAUaUAUAaCUUAGGUGuUAACCCUUu -3'
miRNA:   3'- cAUAcAUAUcGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 136284 0.66 0.999983
Target:  5'- ----aUAUAGUUUAGGUGUugagaugaauACCCUUc -3'
miRNA:   3'- cauacAUAUCGAAUCCACAu---------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 104759 0.66 0.999977
Target:  5'- uUGUaUAUAGCUUAGaUGuUAACCCUUu -3'
miRNA:   3'- cAUAcAUAUCGAAUCcAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 167185 0.66 0.999968
Target:  5'- cGUA--UAUAGCUUAGGUGUuaaaagguuAACuCCUa -3'
miRNA:   3'- -CAUacAUAUCGAAUCCACA---------UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 135930 0.67 0.999956
Target:  5'- aGUAUGU--AGCUUAGGUGUuagGAUCa-- -3'
miRNA:   3'- -CAUACAuaUCGAAUCCACA---UUGGgaa -5'
28251 5' -45.7 NC_005902.1 + 86485 0.67 0.999921
Target:  5'- aGUA--UAUAGCUUAGGUGUuaaaggguuaAACCUa- -3'
miRNA:   3'- -CAUacAUAUCGAAUCCACA----------UUGGGaa -5'
28251 5' -45.7 NC_005902.1 + 74810 0.67 0.999911
Target:  5'- uGUAUaUAUAGCUUAGGUGUuaaaagguuaauUCCUUa -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCACAuu----------GGGAA- -5'
28251 5' -45.7 NC_005902.1 + 158165 0.67 0.999895
Target:  5'- ----aUAUAGCUUAGGcauUAACCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCac-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 88603 0.67 0.999889
Target:  5'- aGUAaGUAUAGCUUAGGUGUuaaaggguaaauAUCUUUu -3'
miRNA:   3'- -CAUaCAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 54083 0.68 0.999862
Target:  5'- ----aUAUAGUUUAGGUGuUAACUCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 20093 0.68 0.999768
Target:  5'- uGUAUaUAUAGCUUaaguauuaaaAGGUGUuuACCCUUu -3'
miRNA:   3'- -CAUAcAUAUCGAA----------UCCACAu-UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 140962 0.69 0.99937
Target:  5'- aGUA--UAUAGCUUAGGUGUuaaaagguaaacACCCUUu -3'
miRNA:   3'- -CAUacAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 20322 0.69 0.99937
Target:  5'- uGUAUaUAUAGCUUAGGUGUuaauagauaaauACCUUUu -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCACAu-----------UGGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.