miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28252 5' -44.4 NC_005902.1 + 104759 0.66 1
Target:  5'- uUGUAUAUA--GCUUaGaUGUUAACCCu -3'
miRNA:   3'- -ACAUAUAUacCGAAgCcACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 177347 0.66 1
Target:  5'- uUGUAUAUA--GCaUaaGUGUUAACCCu -3'
miRNA:   3'- -ACAUAUAUacCGaAgcCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 110079 0.66 1
Target:  5'- cGUAUAUA--GCUUauauaaaGG-GUUAACCCu -3'
miRNA:   3'- aCAUAUAUacCGAAg------CCaCAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 4871 0.66 1
Target:  5'- uUGcUAUcaGUGGCacgUUUGGaGUUAACCCu -3'
miRNA:   3'- -AC-AUAuaUACCG---AAGCCaCAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 138802 0.67 0.999999
Target:  5'- gUGUGUAUAUaGCUUaGGUGUUAAa-- -3'
miRNA:   3'- -ACAUAUAUAcCGAAgCCACAAUUggg -5'
28252 5' -44.4 NC_005902.1 + 48264 0.67 0.999999
Target:  5'- uUGUAUAUAUaGCUUaGGUGUUAAa-- -3'
miRNA:   3'- -ACAUAUAUAcCGAAgCCACAAUUggg -5'
28252 5' -44.4 NC_005902.1 + 162431 0.67 0.999999
Target:  5'- uUGUGUGUAUaGCUUaGGUGUUAAa-- -3'
miRNA:   3'- -ACAUAUAUAcCGAAgCCACAAUUggg -5'
28252 5' -44.4 NC_005902.1 + 20153 0.67 0.999999
Target:  5'- cGUAUAUA--GCUUaGGUGUUAaaggguauucACCCu -3'
miRNA:   3'- aCAUAUAUacCGAAgCCACAAU----------UGGG- -5'
28252 5' -44.4 NC_005902.1 + 54374 0.67 0.999999
Target:  5'- gUGUAUGUAUaGCUUaGGUGUUAAa-- -3'
miRNA:   3'- -ACAUAUAUAcCGAAgCCACAAUUggg -5'
28252 5' -44.4 NC_005902.1 + 142024 0.67 0.999999
Target:  5'- cGUGUAUAUaGCUUaGGUGUUAaaagguauuuuuAUCCu -3'
miRNA:   3'- aCAUAUAUAcCGAAgCCACAAU------------UGGG- -5'
28252 5' -44.4 NC_005902.1 + 140962 0.67 0.999999
Target:  5'- aGUAUAUA--GCUUaGGUGUUAaaagguaaacACCCu -3'
miRNA:   3'- aCAUAUAUacCGAAgCCACAAU----------UGGG- -5'
28252 5' -44.4 NC_005902.1 + 74809 0.67 0.999998
Target:  5'- gUGUAUAUAUaGCUUaGGUGUUAAaagguuaauUCCu -3'
miRNA:   3'- -ACAUAUAUAcCGAAgCCACAAUU---------GGG- -5'
28252 5' -44.4 NC_005902.1 + 50083 0.67 0.999998
Target:  5'- uUGUAUAUA--GCUUaGGUaUUAACCCu -3'
miRNA:   3'- -ACAUAUAUacCGAAgCCAcAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 162628 0.67 0.999998
Target:  5'- aGUAUAUA--GCUUgaauGUGUUAGCCCu -3'
miRNA:   3'- aCAUAUAUacCGAAgc--CACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 100002 0.68 0.999997
Target:  5'- -cUAUAUAUGaacauauauaauauaGCUUaGGUGUUAAUCCu -3'
miRNA:   3'- acAUAUAUAC---------------CGAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 85922 0.68 0.999997
Target:  5'- -cUAUAUAUGaacauauauaauauaGCUUaGGUGUUAAUCCu -3'
miRNA:   3'- acAUAUAUAC---------------CGAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 182963 0.68 0.999995
Target:  5'- gUGUAUAUAUaGCUUaGGUGUUAAaUCg -3'
miRNA:   3'- -ACAUAUAUAcCGAAgCCACAAUUgGG- -5'
28252 5' -44.4 NC_005902.1 + 113819 0.68 0.999993
Target:  5'- aUGUAUAUAUaGUUUaGGUGUUAACg- -3'
miRNA:   3'- -ACAUAUAUAcCGAAgCCACAAUUGgg -5'
28252 5' -44.4 NC_005902.1 + 23442 0.68 0.99999
Target:  5'- uUGUAUAUA--GCUUgaauGUGUUAGCCCu -3'
miRNA:   3'- -ACAUAUAUacCGAAgc--CACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 6285 0.68 0.999985
Target:  5'- uUGUAUAUA--GCUUCaGUaUUAACCCu -3'
miRNA:   3'- -ACAUAUAUacCGAAGcCAcAAUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.