Results 41 - 60 of 419 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28254 | 3' | -43.1 | NC_005902.1 | + | 95942 | 0.93 | 0.33834 |
Target: 5'- aUACCCUUUAACACUUAAGUUAUAUAc -3' miRNA: 3'- aAUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 30796 | 0.96 | 0.254235 |
Target: 5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 50209 | 1.02 | 0.118981 |
Target: 5'- -aACCCUUUAACACCUAAGCUAUAUAu -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 116826 | 0.94 | 0.329919 |
Target: 5'- aUACCCUUUAACAUCUAAGUUAUAUAc -3' miRNA: 3'- aAUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 23255 | 1.02 | 0.118981 |
Target: 5'- -aACCCUUUAACACCUAAGCUAUAUAu -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 42236 | 0.88 | 0.558978 |
Target: 5'- -aACCUcUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGaAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 13181 | 1.02 | 0.1225 |
Target: 5'- -aACCCUUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 116630 | 0.89 | 0.514656 |
Target: 5'- -aACUUUUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 48252 | 0.9 | 0.482373 |
Target: 5'- -aAUCCUUUAACACUUAAGCUAUAUAu -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 136044 | 0.91 | 0.430881 |
Target: 5'- -aACCCUUUAACuCCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAAUUGuGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 146425 | 0.92 | 0.401575 |
Target: 5'- -aAUCCUUUAACACCUAAGCUAUAa- -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUau -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 114808 | 0.93 | 0.355647 |
Target: 5'- uUUACCCUUUAACACUUAGGUUAUAUAu -3' miRNA: 3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 1144 | 0.93 | 0.355647 |
Target: 5'- -aACCCUUUAAgACCUAAGCUGUAUAc -3' miRNA: 3'- aaUGGGAAAUUgUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 80733 | 0.95 | 0.28266 |
Target: 5'- -aACUCUUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 16873 | 0.96 | 0.268144 |
Target: 5'- cUUAUCCUUUAACACCUAAGCUAUAUc -3' miRNA: 3'- -AAUGGGAAAUUGUGGAUUCGAUAUAu -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 169441 | 0.96 | 0.254235 |
Target: 5'- -aACCCUUUAACACUUAAGCUGUAUAu -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 85339 | 0.96 | 0.254235 |
Target: 5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 48378 | 0.96 | 0.240925 |
Target: 5'- -aACCCUUUAACACCUAAGUUAUGUAc -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 45075 | 0.99 | 0.177815 |
Target: 5'- uUUACCUUUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 99555 | 1.02 | 0.1225 |
Target: 5'- -aACCCUUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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