miRNA display CGI


Results 41 - 60 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 3' -43.1 NC_005902.1 + 34813 0.96 0.240925
Target:  5'- -aACCCUUUAACACCUAAGUUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 136567 0.96 0.240925
Target:  5'- -aACCCUUUAACACCUAAGUUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 167155 0.96 0.247506
Target:  5'- --uCCCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aauGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 135811 0.96 0.254235
Target:  5'- -aGCUCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 40064 0.96 0.254235
Target:  5'- -aACCCUUUAACACUUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 51848 0.96 0.254235
Target:  5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 30796 0.96 0.254235
Target:  5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 61619 0.96 0.254235
Target:  5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 85339 0.96 0.254235
Target:  5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 143017 0.96 0.254235
Target:  5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 69181 0.96 0.254235
Target:  5'- -aACCCUUUAACAUCUAAGCUAUAUGa -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 71602 0.96 0.254235
Target:  5'- -aAUCCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 111228 0.96 0.254235
Target:  5'- -aACCUUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 169441 0.96 0.254235
Target:  5'- -aACCCUUUAACACUUAAGCUGUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 145944 0.96 0.254235
Target:  5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 155211 0.96 0.254235
Target:  5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 162533 0.96 0.261114
Target:  5'- -aACCCUUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 18855 0.96 0.261114
Target:  5'- -aACCUUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 156429 0.96 0.261114
Target:  5'- -aACCUUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 105941 0.96 0.261114
Target:  5'- -aACCUUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.