miRNA display CGI


Results 21 - 40 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 3' -43.1 NC_005902.1 + 90001 1 0.158768
Target:  5'- uUUACCCUUUAACACCUAAGUUAUAUAu -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 18746 1 0.163349
Target:  5'- uUUACCCUUUAACACCUAAGUUAUAUAc -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 54048 1 0.16805
Target:  5'- aUAUCCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 42974 0.99 0.172871
Target:  5'- cUUACCCUUUAACAUCUAAGCUAUAUAu -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 109355 0.99 0.172871
Target:  5'- uUUACCCUUUAACACUUAAGCUAUAUAu -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 137748 0.99 0.172871
Target:  5'- uUUACCCUUUAACACUUAAGCUAUAUAu -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 44012 0.99 0.177815
Target:  5'- aUACCUUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 45075 0.99 0.177815
Target:  5'- uUUACCUUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 146731 0.99 0.177815
Target:  5'- gUAUCCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 86388 0.98 0.193408
Target:  5'- aUACUCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 133671 0.98 0.193408
Target:  5'- uUUACUCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 40966 0.98 0.210185
Target:  5'- -cACCCUUUAAUACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 131663 0.97 0.222055
Target:  5'- -aACCCUUUAACACCUAAGCUAUAc- -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUau -5'
28254 3' -43.1 NC_005902.1 + 81836 0.97 0.228201
Target:  5'- --uCCCUUUAACACCUAAGCUAUAUAa -3'
miRNA:   3'- aauGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 114544 0.97 0.23449
Target:  5'- --cCCCUUUAACACCUAGGCUAUAUAa -3'
miRNA:   3'- aauGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 109794 0.97 0.23449
Target:  5'- -cACCCUUUAACACCUAAGUUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 156544 0.97 0.23449
Target:  5'- uUUACCCuUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- -AAUGGG-AAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 116942 0.96 0.240925
Target:  5'- -aACCCUUUAACACCUAGGUUAUAUAa -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 88563 0.96 0.240925
Target:  5'- -aACCCUUUAACACCUAAGUUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 34813 0.96 0.240925
Target:  5'- -aACCCUUUAACACCUAAGUUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.