miRNA display CGI


Results 21 - 40 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 3' -43.1 NC_005902.1 + 11279 0.78 0.967388
Target:  5'- uUUACUCUUUAACACUUAAGUgUAUAUAc -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCG-AUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 11405 0.89 0.536658
Target:  5'- -cACUCUUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 11490 0.82 0.849799
Target:  5'- uUUACUUUUUAAUAUCUAAGCUAUAUAc -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 12541 0.77 0.970731
Target:  5'- -aACCCUUUAAUACCUAAaUUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUcGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 12824 0.86 0.684186
Target:  5'- -aACCCUUUAACuCCUAAGUUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGuGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 13181 1.02 0.1225
Target:  5'- -aACCCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 13397 0.76 0.989206
Target:  5'- -aACCU---AAUACCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGaaaUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 15148 0.82 0.840821
Target:  5'- -aACCUUUUAACAUgUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGgAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 15422 0.95 0.275325
Target:  5'- -aACUCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 15471 0.68 0.999998
Target:  5'- gUUACaaggUUAAUGCUUAAGCUAUAUAc -3'
miRNA:   3'- -AAUGgga-AAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 16461 0.79 0.946609
Target:  5'- uUUACCUUUUAACACCUAAaCUAUAc- -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUcGAUAUau -5'
28254 3' -43.1 NC_005902.1 + 16513 0.8 0.930685
Target:  5'- -aACCCUgUAACACCUGAGaUAUAUAg -3'
miRNA:   3'- aaUGGGAaAUUGUGGAUUCgAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 16803 0.67 1
Target:  5'- -aACCCUUUAACuCCUAAgGCa----- -3'
miRNA:   3'- aaUGGGAAAUUGuGGAUU-CGauauau -5'
28254 3' -43.1 NC_005902.1 + 16873 0.96 0.268144
Target:  5'- cUUAUCCUUUAACACCUAAGCUAUAUc -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAu -5'
28254 3' -43.1 NC_005902.1 + 16888 0.74 0.996412
Target:  5'- ---aCUUUUAACAUCUAAGCUAUGa- -3'
miRNA:   3'- aaugGGAAAUUGUGGAUUCGAUAUau -5'
28254 3' -43.1 NC_005902.1 + 18693 0.66 1
Target:  5'- uUUACCCUUUAAUuCCUaAAGCa----- -3'
miRNA:   3'- -AAUGGGAAAUUGuGGA-UUCGauauau -5'
28254 3' -43.1 NC_005902.1 + 18746 1 0.163349
Target:  5'- uUUACCCUUUAACACCUAAGUUAUAUAc -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 18855 0.96 0.261114
Target:  5'- -aACCUUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 19796 0.66 1
Target:  5'- -aACUCUUUAACGCauaAGGCuUAUAUAa -3'
miRNA:   3'- aaUGGGAAAUUGUGga-UUCG-AUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 20060 0.77 0.981666
Target:  5'- -aACCCUUUAACACaUAAGCcAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGgAUUCGaUAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.